FOXA2 (forkhead box A2)

Identity

Other names	HNF3B
	MGC19807
	TCF3B
HGNC	FOXA2
Location	20p11
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	FOXA2   5022
Entrez_Gene	FOXA2  3170  forkhead box A2
	Cards
GeneCards	FOXA2
Ensembl	FOXA2 [Search_View]   ENSG00000125798 [Gene_View]
Genatlas	FOXA2
GeneLynx	FOXA2
eGenome	FOXA2
euGene	3170
	Genomic and cartography
GoldenPath	FOXA2  -  20p11   chr20:22509642-22513101 -  20p11.21   [Description]    (hg18-March_2006)
Ensembl	FOXA2 - 20p11.21 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	FOXA2
	Gene and transcription
Genbank	AA469087 [ ENTREZ ]
Genbank	AB028021 [ ENTREZ ]
Genbank	AI268650 [ ENTREZ ]
Genbank	AI302734 [ ENTREZ ]
Genbank	BC006545 [ ENTREZ ]
RefSeq	NM_021784 [ SRS ]    NM_021784 [ ENTREZ ]
RefSeq	NM_153675 [ SRS ]    NM_153675 [ ENTREZ ]
RefSeq	AC_000063 [ SRS ]    AC_000063 [ ENTREZ ]
RefSeq	AC_000152 [ SRS ]    AC_000152 [ ENTREZ ]
RefSeq	NC_000020 [ SRS ]    NC_000020 [ ENTREZ ]
RefSeq	NT_011387 [ SRS ]    NT_011387 [ ENTREZ ]
RefSeq	NW_001838653 [ SRS ]    NW_001838653 [ ENTREZ ]
RefSeq	NW_927317 [ SRS ]    NW_927317 [ ENTREZ ]
AceView	FOXA2 AceView - NCBI
Unigene	Hs.155651 [ SRS ]    Hs.155651 [ NCBI ]     HS155651 [ spliceNest ]
Fast-db	6762 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q9Y261 [ SRS]    Q9Y261 [ EXPASY ]     Q9Y261 [ INTERPRO ]     Q9Y261 [ UNIPROT ]
Prosite	PS00657 FORK_HEAD_1 [ SRS ]    PS00657 FORK_HEAD_1 [ Expasy ]
Prosite	PS00658 FORK_HEAD_2 [ SRS ]    PS00658 FORK_HEAD_2 [ Expasy ]
Prosite	PS50039 FORK_HEAD_3 [ SRS ]    PS50039 FORK_HEAD_3 [ Expasy ]
Interpro	IPR013638 Fork-head_N [ SRS ]    IPR013638 Fork-head_N [ EBI ]
Interpro	IPR001766 TF_Fork_head [ SRS ]    IPR001766 TF_Fork_head [ EBI ]
Interpro	IPR011991 Wing_hlx_DNA_bd [ SRS ]    IPR011991 Wing_hlx_DNA_bd [ EBI ]
CluSTr	Q9Y261
Pfam	PF00250 Fork_head [ SRS ]    PF00250 Fork_head [ Sanger ]    pfam00250 [ NCBI-CDD ]
Pfam	PF08430 Fork_head_N [ SRS ]    PF08430 Fork_head_N [ Sanger ]    pfam08430 [ NCBI-CDD ]
Smart	SM00339 FH [EMBL]
Prodom	PD000425 TF_Fork_head[INRA-Toulouse]
Prodom	Q9Y261 FOXA2_HUMAN [ Domain structure ]   Q9Y261 FOXA2_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	Q9Y261
HPRD	02618
	Protein Interaction databases
DIP	Q9Y261
IntAct	Q9Y261
	Polymorphism : SNP, mutations, diseases
OMIM	600288    [ map ]
GENECLINICS	600288
SNP	FOXA2 [dbSNP-NCBI]
SNP	NM_021784 [SNP-NCI]
SNP	NM_153675 [SNP-NCI]
SNP	FOXA2 [GeneSNPs - Utah]  FOXA2] [HGBASE - SRS]
HAPMAP	FOXA2 [HAPMAP]
COSMIC	FOXA2 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	FOXA2
	General knowledge
Family Browser	FOXA2 [UCSC Family Browser]
SOURCE	NM_021784
SOURCE	NM_153675
SMD	Hs.155651
SAGE	Hs.155651
GO	transcription factor activity [Amigo]  transcription factor activity
GO	nucleus [Amigo]  nucleus
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	blood coagulation [Amigo]  blood coagulation
GO	regulation of specific transcription from RNA polymerase II promoter [Amigo]  regulation of specific transcription from RNA polymerase II promoter
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
KEGG	Maturity onset diabetes of the young
PubGene	FOXA2
TreeFam	FOXA2
CTD	3170 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	FOXA2 Related clones (RZPD - Berlin)
	PubMed
PubMed	29 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:11:29 2008