FOXC1 (forkhead box C1)

Identity

Other names	ARA
	FKHL7
	FREAC-3
	FREAC3
	IGDA
	IHG1
	IRID1
HGNC	FOXC1
Location	6p25
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	FOXC1   3800
Entrez_Gene	FOXC1  2296  forkhead box C1
	Cards
GeneCards	FOXC1
Ensembl	FOXC1 [Search_View]   ENSG00000054598 [Gene_View]
Genatlas	FOXC1
GeneLynx	FOXC1
eGenome	FOXC1
euGene	2296
	Genomic and cartography
GoldenPath	FOXC1  -  6p25   chr6:1555680-1559128 +  6p25.3   [Description]    (hg18-March_2006)
Ensembl	FOXC1 - 6p25.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	FOXC1
	Gene and transcription
Genbank	AK021858 [ ENTREZ ]
Genbank	BC134421 [ ENTREZ ]
Genbank	L12143 [ ENTREZ ]
Genbank	U13221 [ ENTREZ ]
RefSeq	NM_001453 [ SRS ]    NM_001453 [ ENTREZ ]
RefSeq	AC_000049 [ SRS ]    AC_000049 [ ENTREZ ]
RefSeq	AC_000138 [ SRS ]    AC_000138 [ ENTREZ ]
RefSeq	NC_000006 [ SRS ]    NC_000006 [ ENTREZ ]
RefSeq	NT_034880 [ SRS ]    NT_034880 [ ENTREZ ]
RefSeq	NW_001838972 [ SRS ]    NW_001838972 [ ENTREZ ]
RefSeq	NW_922984 [ SRS ]    NW_922984 [ ENTREZ ]
AceView	FOXC1 AceView - NCBI
Unigene	Hs.348883 [ SRS ]    Hs.348883 [ NCBI ]     HS348883 [ spliceNest ]
	Protein : pattern, domain, 3D structure
SwissProt	Q12948 [ SRS]    Q12948 [ EXPASY ]     Q12948 [ INTERPRO ]     Q12948 [ UNIPROT ]
Prosite	PS00657 FORK_HEAD_1 [ SRS ]    PS00657 FORK_HEAD_1 [ Expasy ]
Prosite	PS00658 FORK_HEAD_2 [ SRS ]    PS00658 FORK_HEAD_2 [ Expasy ]
Prosite	PS50039 FORK_HEAD_3 [ SRS ]    PS50039 FORK_HEAD_3 [ Expasy ]
Interpro	IPR001766 TF_Fork_head [ SRS ]    IPR001766 TF_Fork_head [ EBI ]
CluSTr	Q12948
Pfam	PF00250 Fork_head [ SRS ]    PF00250 Fork_head [ Sanger ]    pfam00250 [ NCBI-CDD ]
Smart	SM00339 FH [EMBL]
Prodom	PD000425 TF_Fork_head[INRA-Toulouse]
Prodom	Q12948 FOXC1_HUMAN [ Domain structure ]   Q12948 FOXC1_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	Q12948
HPRD	03054
	Protein Interaction databases
DIP	Q12948
IntAct	Q12948
	Polymorphism : SNP, mutations, diseases
OMIM	601090;601631    [ map ]
GENECLINICS	601090;601631
SNP	FOXC1 [dbSNP-NCBI]
SNP	NM_001453 [SNP-NCI]
SNP	FOXC1 [GeneSNPs - Utah]  FOXC1] [HGBASE - SRS]
HAPMAP	FOXC1 [HAPMAP]
COSMIC	FOXC1 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	FOXC1
	General knowledge
Family Browser	FOXC1 [UCSC Family Browser]
SOURCE	NM_001453
SMD	Hs.348883
SAGE	Hs.348883
GO	ossification [Amigo]  ossification
GO	ovarian follicle development [Amigo]  ovarian follicle development
GO	blood vessel development [Amigo]  blood vessel development
GO	ureteric bud development [Amigo]  ureteric bud development
GO	in utero embryonic development [Amigo]  in utero embryonic development
GO	kidney development [Amigo]  kidney development
GO	lymph vessel development [Amigo]  lymph vessel development
GO	blood vessel remodeling [Amigo]  blood vessel remodeling
GO	heart morphogenesis [Amigo]  heart morphogenesis
GO	RNA polymerase II transcription factor activity, enhancer binding [Amigo]  RNA polymerase II transcription factor activity, enhancer binding
GO	nucleus [Amigo]  nucleus
GO	nucleus [Amigo]  nucleus
GO	nuclear heterochromatin [Amigo]  nuclear heterochromatin
GO	transcription [Amigo]  transcription
GO	anti-apoptosis [Amigo]  anti-apoptosis
GO	Notch signaling pathway [Amigo]  Notch signaling pathway
GO	brain development [Amigo]  brain development
GO	transcription factor binding [Amigo]  transcription factor binding
GO	DNA bending activity [Amigo]  DNA bending activity
GO	germ cell migration [Amigo]  germ cell migration
GO	neural crest cell development [Amigo]  neural crest cell development
GO	transcription activator activity [Amigo]  transcription activator activity
GO	collagen fibril organization [Amigo]  collagen fibril organization
GO	glycosaminoglycan metabolic process [Amigo]  glycosaminoglycan metabolic process
GO	lacrimal gland development [Amigo]  lacrimal gland development
GO	embryonic heart tube development [Amigo]  embryonic heart tube development
GO	odontogenesis of dentine-containing tooth [Amigo]  odontogenesis of dentine-containing tooth
GO	camera-type eye development [Amigo]  camera-type eye development
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
GO	negative regulation of mitotic cell cycle [Amigo]  negative regulation of mitotic cell cycle
GO	positive regulation of transcription from RNA polymerase II promoter [Amigo]  positive regulation of transcription from RNA polymerase II promoter
GO	regulation of organ growth [Amigo]  regulation of organ growth
GO	vascular endothelial growth factor receptor signaling pathway [Amigo]  vascular endothelial growth factor receptor signaling pathway
GO	paraxial mesoderm formation [Amigo]  paraxial mesoderm formation
GO	mesenchymal cell differentiation [Amigo]  mesenchymal cell differentiation
GO	artery morphogenesis [Amigo]  artery morphogenesis
GO	regulation of blood vessel size [Amigo]  regulation of blood vessel size
GO	ventricular cardiac muscle morphogenesis [Amigo]  ventricular cardiac muscle morphogenesis
GO	cardiac muscle cell proliferation [Amigo]  cardiac muscle cell proliferation
PubGene	FOXC1
TreeFam	FOXC1
CTD	2296 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	FOXC1 Related clones (RZPD - Berlin)
	PubMed
PubMed	44 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:11:30 2008