GABARAP (GABA(A) receptor-associated protein)

Identity

Other names	FLJ25768
	MGC120154
	MGC120155
	MM46
HGNC	GABARAP
Location	17p13.1
Location_base_pair	Starts at 7084462 and ends at 7086477 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	GABARAP   4067
Entrez_Gene	GABARAP  11337  GABA(A) receptor-associated protein
	Cards
GeneCards	GABARAP
Ensembl	GABARAP [Search_View]   ENSG00000170296 [Gene_View]
Genatlas	GABARAP
GeneLynx	GABARAP
eGenome	GABARAP
euGene	11337
	Genomic and cartography
GoldenPath	GABARAP  -  17p13.1   chr17:7084462-7086477 -  17p13.1   [Description]    (hg18-March_2006)
Ensembl	GABARAP - 17p13.1 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	GABARAP
	Gene and transcription
Genbank	AB030711 [ ENTREZ ]
Genbank	AF044671 [ ENTREZ ]
Genbank	AF067171 [ ENTREZ ]
Genbank	AF161586 [ ENTREZ ]
Genbank	AF183425 [ ENTREZ ]
RefSeq	NM_007278 [ SRS ]    NM_007278 [ ENTREZ ]
RefSeq	AC_000060 [ SRS ]    AC_000060 [ ENTREZ ]
RefSeq	AC_000149 [ SRS ]    AC_000149 [ ENTREZ ]
RefSeq	NC_000017 [ SRS ]    NC_000017 [ ENTREZ ]
RefSeq	NT_010718 [ SRS ]    NT_010718 [ ENTREZ ]
RefSeq	NW_001838403 [ SRS ]    NW_001838403 [ ENTREZ ]
RefSeq	NW_926584 [ SRS ]    NW_926584 [ ENTREZ ]
AceView	GABARAP AceView - NCBI
Unigene	Hs.647421 [ SRS ]    Hs.647421 [ NCBI ]     HS647421 [ spliceNest ]
Fast-db	2759 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	O95166 [ SRS]    O95166 [ EXPASY ]     O95166 [ INTERPRO ]     O95166 [ UNIPROT ]
Interpro	IPR004241 MAP1_LC3 [ SRS ]    IPR004241 MAP1_LC3 [ EBI ]
CluSTr	O95166
Pfam	PF02991 MAP1_LC3 [ SRS ]    PF02991 MAP1_LC3 [ Sanger ]    pfam02991 [ NCBI-CDD ]
Blocks	O95166
PDB	1GNU [ SRS ]    1GNU [ PdbSum ],   1GNU [ IMB ]   1GNU [ RSDB ]
PDB	1KLV [ SRS ]    1KLV [ PdbSum ],   1KLV [ IMB ]   1KLV [ RSDB ]
PDB	1KM7 [ SRS ]    1KM7 [ PdbSum ],   1KM7 [ IMB ]   1KM7 [ RSDB ]
PDB	1KOT [ SRS ]    1KOT [ PdbSum ],   1KOT [ IMB ]   1KOT [ RSDB ]
HPRD	05496
	Protein Interaction databases
DIP	O95166
IntAct	O95166
	Polymorphism : SNP, mutations, diseases
OMIM	605125    [ map ]
GENECLINICS	605125
SNP	GABARAP [dbSNP-NCBI]
SNP	NM_007278 [SNP-NCI]
SNP	GABARAP [GeneSNPs - Utah]  GABARAP] [HGBASE - SRS]
HAPMAP	GABARAP [HAPMAP]
HGMD	GABARAP
	General knowledge
Family Browser	GABARAP [UCSC Family Browser]
SOURCE	NM_007278
SMD	Hs.647421
SAGE	Hs.647421
GO	Golgi membrane [Amigo]  Golgi membrane
GO	microtubule cytoskeleton organization and biogenesis [Amigo]  microtubule cytoskeleton organization and biogenesis
GO	autophagic vacuole membrane [Amigo]  autophagic vacuole membrane
GO	protein binding [Amigo]  protein binding
GO	cytoplasm [Amigo]  cytoplasm
GO	lysosome [Amigo]  lysosome
GO	smooth endoplasmic reticulum [Amigo]  smooth endoplasmic reticulum
GO	Golgi apparatus [Amigo]  Golgi apparatus
GO	microtubule [Amigo]  microtubule
GO	microtubule associated complex [Amigo]  microtubule associated complex
GO	plasma membrane [Amigo]  plasma membrane
GO	protein targeting [Amigo]  protein targeting
GO	synaptic transmission [Amigo]  synaptic transmission
GO	microtubule binding [Amigo]  microtubule binding
GO	protein transport [Amigo]  protein transport
GO	actin cytoskeleton [Amigo]  actin cytoskeleton
GO	beta-tubulin binding [Amigo]  beta-tubulin binding
GO	GABA receptor binding [Amigo]  GABA receptor binding
BIOCARTA	Gamma-aminobutyric Acid Receptor Life Cycle    [Genes]
KEGG	Regulation of autophagy
PubGene	GABARAP
TreeFam	GABARAP
CTD	11337 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	GABARAP Related clones (RZPD - Berlin)
	PubMed
PubMed	36 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:42:28 2008