GATA6 (GATA binding protein 6)

Identity

Other names	-
HGNC	GATA6
Location	18q11-q12
Location_base_pair	Starts at 18003414 and ends at 18036225 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	GATA6   4174
Entrez_Gene	GATA6  2627  GATA binding protein 6
	Cards
GeneCards	GATA6
Ensembl	ENSG00000141448 [Gene_View]  GATA6 [Vega]
Genatlas	GATA6
	Genomic and cartography
GoldenPath	GATA6  -     chr18:18003414-18036225 +  18q11.2   [Description]    (hg18-March_2006)
Ensembl	GATA6 - 18q11.2 [CytoView]
NCBI	Mapview
OMIM	601656 Disease map [OMIM]
HomoloGene	GATA6
	Gene and transcription
Genbank	AK223547 [ ENTREZ ]
Genbank	BC027891 [ ENTREZ ]
Genbank	CR591851 [ ENTREZ ]
Genbank	D87811 [ ENTREZ ]
Genbank	U66075 [ ENTREZ ]
RefSeq	NM_005257 [ SRS ]    NM_005257 [ ENTREZ ]
RefSeq	AC_000061 [ SRS ]    AC_000061 [ ENTREZ ]
RefSeq	AC_000150 [ SRS ]    AC_000150 [ ENTREZ ]
RefSeq	NC_000018 [ SRS ]    NC_000018 [ ENTREZ ]
RefSeq	NT_010966 [ SRS ]    NT_010966 [ ENTREZ ]
RefSeq	NW_001838467 [ SRS ]    NW_001838467 [ ENTREZ ]
RefSeq	NW_927095 [ SRS ]    NW_927095 [ ENTREZ ]
CCDS	GATA6 CCDS - NCBI
AceView	GATA6 AceView - NCBI
Unigene	Hs.514746 [ SRS ]    Hs.514746 [ NCBI ]
Fast-db	2074 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q05CA6 [ SRS]    Q05CA6 [ EXPASY ]     Q05CA6 [ INTERPRO ]     Q05CA6 [ UNIPROT ] Q05CA6 [ VarSplice FASTA ]
Interpro	IPR008013 GATA_N [ SRS ]    IPR008013 GATA_N [ EBI ]
CluSTr	Q05CA6
Pfam	PF05349 GATA-N [ SRS ]    PF05349 GATA-N [ Sanger ]    pfam05349 [ NCBI-CDD ]
Blocks	Q05CA6
HPRD	09043
	Protein Interaction databases
DIP	Q05CA6
IntAct	Q05CA6
	Polymorphism : SNP, mutations, diseases
OMIM	601656    [ map ]
GENETests	601656
SNP	GATA6 [dbSNP-NCBI]
SNP	NM_005257 [SNP-NCI]
SNP	GATA6 [GeneSNPs - Utah]  GATA6] [HGBASE - SRS]
HAPMAP	GATA6 [HAPMAP]
HGMD	GATA6
Genetic Association	GATA6
CDC HuGE	GATA6
	General knowledge
Family Browser	GATA6 [UCSC Family Browser]
SOURCE	NM_005257
SMD	Hs.514746
SAGE	Hs.514746
GO	liver development [Amigo]  liver development
GO	chromatin binding [Amigo]  chromatin binding
GO	RNA polymerase II transcription factor activity, enhancer binding [Amigo]  RNA polymerase II transcription factor activity, enhancer binding
GO	nucleus [Amigo]  nucleus
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	muscle development [Amigo]  muscle development
GO	transcription factor binding [Amigo]  transcription factor binding
GO	zinc ion binding [Amigo]  zinc ion binding
GO	transcription activator activity [Amigo]  transcription activator activity
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
GO	positive regulation of transcription [Amigo]  positive regulation of transcription
GO	positive regulation of transcription from RNA polymerase II promoter [Amigo]  positive regulation of transcription from RNA polymerase II promoter
GO	metal ion binding [Amigo]  metal ion binding
PubGene	GATA6
TreeFam	GATA6
CTD	2627 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	GATA6 Related clones (RZPD - Berlin)
	PubMed
PubMed	39 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

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Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Dec 6 16:47:47 2008