GDNF (glial cell derived neurotrophic factor)

Identity

Other names	ATF1
	ATF2
	HFB1-GDNF
HGNC	GDNF
Location	5p13.1-p12
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	GDNF   4232
Entrez_Gene	GDNF  2668  glial cell derived neurotrophic factor
	Cards
GeneCards	GDNF
Ensembl	GDNF [Search_View]   ENSG00000168621 [Gene_View]
Genatlas	GDNF
GeneLynx	GDNF
eGenome	GDNF
euGene	2668
	Genomic and cartography
GoldenPath	GDNF  -     chr5:37851510-37875539 -  5p13.2   [Description]    (hg18-March_2006)
Ensembl	GDNF - 5p13.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	GDNF
	Gene and transcription
Genbank	AF053748 [ ENTREZ ]
Genbank	AJ001897 [ ENTREZ ]
Genbank	AJ001898 [ ENTREZ ]
Genbank	AJ001899 [ ENTREZ ]
Genbank	AJ001900 [ ENTREZ ]
RefSeq	NM_000514 [ SRS ]    NM_000514 [ ENTREZ ]
RefSeq	NM_199231 [ SRS ]    NM_199231 [ ENTREZ ]
RefSeq	NM_199234 [ SRS ]    NM_199234 [ ENTREZ ]
RefSeq	AC_000048 [ SRS ]    AC_000048 [ ENTREZ ]
RefSeq	AC_000137 [ SRS ]    AC_000137 [ ENTREZ ]
RefSeq	NC_000005 [ SRS ]    NC_000005 [ ENTREZ ]
RefSeq	NT_006576 [ SRS ]    NT_006576 [ ENTREZ ]
RefSeq	NW_001838933 [ SRS ]    NW_001838933 [ ENTREZ ]
RefSeq	NW_922596 [ SRS ]    NW_922596 [ ENTREZ ]
AceView	GDNF AceView - NCBI
Unigene	Hs.248114 [ SRS ]    Hs.248114 [ NCBI ]     HS248114 [ spliceNest ]
Fast-db	2952 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P39905 [ SRS]    P39905 [ EXPASY ]     P39905 [ INTERPRO ]     P39905 [ UNIPROT ]
Prosite	PS00250 TGF_BETA_1 [ SRS ]    PS00250 TGF_BETA_1 [ Expasy ]
Prosite	PS51362 TGF_BETA_2 [ SRS ]    PS51362 TGF_BETA_2 [ Expasy ]
Interpro	IPR016649 GDNF [ SRS ]    IPR016649 GDNF [ EBI ]
Interpro	IPR002400 GF_cysknot [ SRS ]    IPR002400 GF_cysknot [ EBI ]
Interpro	IPR001839 TGFb [ SRS ]    IPR001839 TGFb [ EBI ]
CluSTr	P39905
Pfam	PF00019 TGF_beta [ SRS ]    PF00019 TGF_beta [ Sanger ]    pfam00019 [ NCBI-CDD ]
Smart	SM00204 TGFB [EMBL]
Prodom	PD000357 TGFb[INRA-Toulouse]
Prodom	P39905 GDNF_HUMAN [ Domain structure ]   P39905 GDNF_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P39905
HPRD	02906
	Protein Interaction databases
DIP	P39905
IntAct	P39905
	Polymorphism : SNP, mutations, diseases
OMIM	142623;171300;209880;600837    [ map ]
GENECLINICS	142623;171300;209880;600837
SNP	GDNF [dbSNP-NCBI]
SNP	NM_000514 [SNP-NCI]
SNP	NM_199231 [SNP-NCI]
SNP	NM_199234 [SNP-NCI]
SNP	GDNF [GeneSNPs - Utah]  GDNF] [HGBASE - SRS]
HAPMAP	GDNF [HAPMAP]
HGMD	GDNF
	General knowledge
Family Browser	GDNF [UCSC Family Browser]
SOURCE	NM_000514
SOURCE	NM_199231
SOURCE	NM_199234
SMD	Hs.248114
SAGE	Hs.248114
GO	neural crest cell migration [Amigo]  neural crest cell migration
GO	extracellular region [Amigo]  extracellular region
GO	anti-apoptosis [Amigo]  anti-apoptosis
GO	signal transduction [Amigo]  signal transduction
GO	nervous system development [Amigo]  nervous system development
GO	growth factor activity [Amigo]  growth factor activity
GO	growth factor activity [Amigo]  growth factor activity
GO	biological_process [Amigo]  biological_process
GO	neurite development [Amigo]  neurite development
GO	protein homodimerization activity [Amigo]  protein homodimerization activity
GO	negative regulation of neuron apoptosis [Amigo]  negative regulation of neuron apoptosis
GO	regulation of dopamine uptake [Amigo]  regulation of dopamine uptake
PubGene	GDNF
TreeFam	GDNF
CTD	2668 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	GDNF Related clones (RZPD - Berlin)
	PubMed
PubMed	73 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:12:28 2008