HOXA13 (homeobox A13)

Identity

Other names	HOX1
	HOX1J
HGNC	HOXA13
Location	7p15.2
Location_base_pair	Starts at 27203024 and ends at 27206250 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	HOXA13   5102
Entrez_Gene	HOXA13  3209  homeobox A13
	Cards
GeneCards	HOXA13
Ensembl	ENSG00000106031 [Gene_View]  HOXA13 [Vega]
Genatlas	HOXA13
	Genomic and cartography
GoldenPath	HOXA13  -  7p15.2   chr7:27203024-27206250 -  7p15.2   [Description]    (hg18-March_2006)
Ensembl	HOXA13 - 7p15.2 [CytoView]
NCBI	Mapview
OMIM	140000 Disease map [OMIM]
OMIM	142959 Disease map [OMIM]
OMIM	176305 Disease map [OMIM]
HomoloGene	HOXA13
	Gene and transcription
Genbank	AL597666 [ ENTREZ ]
Genbank	BC016712 [ ENTREZ ]
Genbank	BC075791 [ ENTREZ ]
RefSeq	NM_000522 [ SRS ]    NM_000522 [ ENTREZ ]
RefSeq	AC_000050 [ SRS ]    AC_000050 [ ENTREZ ]
RefSeq	AC_000068 [ SRS ]    AC_000068 [ ENTREZ ]
RefSeq	AC_000139 [ SRS ]    AC_000139 [ ENTREZ ]
RefSeq	NC_000007 [ SRS ]    NC_000007 [ ENTREZ ]
RefSeq	NG_008181 [ SRS ]    NG_008181 [ ENTREZ ]
RefSeq	NT_007819 [ SRS ]    NT_007819 [ ENTREZ ]
RefSeq	NT_079592 [ SRS ]    NT_079592 [ ENTREZ ]
RefSeq	NW_001839003 [ SRS ]    NW_001839003 [ ENTREZ ]
RefSeq	NW_923240 [ SRS ]    NW_923240 [ ENTREZ ]
CCDS	HOXA13 CCDS - NCBI
AceView	HOXA13 AceView - NCBI
Unigene	Hs.592172 [ SRS ]    Hs.592172 [ NCBI ]
Fast-db	3215 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P31271 [ SRS]    P31271 [ EXPASY ]     P31271 [ INTERPRO ]     P31271 [ UNIPROT ] P31271 [ VarSplice FASTA ]
Prosite	PS00027 HOMEOBOX_1 [ SRS ]    PS00027 HOMEOBOX_1 [ Expasy ]
Prosite	PS50071 HOMEOBOX_2 [ SRS ]    PS50071 HOMEOBOX_2 [ Expasy ]
Interpro	IPR001356 Homeobox [ SRS ]    IPR001356 Homeobox [ EBI ]
Interpro	IPR012287 Homeodomain-rel [ SRS ]    IPR012287 Homeodomain-rel [ EBI ]
CluSTr	P31271
Pfam	PF00046 Homeobox [ SRS ]    PF00046 Homeobox [ Sanger ]    pfam00046 [ NCBI-CDD ]
Smart	SM00389 HOX [EMBL]
Prodom	PD000010 Homeobox[INRA-Toulouse]
Prodom	P31271 HXA13_HUMAN [ Domain structure ]   P31271 HXA13_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P31271
HPRD	00847
	Protein Interaction databases
DIP	P31271
IntAct	P31271
	Polymorphism : SNP, mutations, diseases
OMIM	140000    [ map ]
OMIM	142959    [ map ]
OMIM	176305    [ map ]
GENETests	140000
GENETests	142959
GENETests	176305
SNP	HOXA13 [dbSNP-NCBI]
SNP	NM_000522 [SNP-NCI]
SNP	HOXA13 [GeneSNPs - Utah]  HOXA13] [HGBASE - SRS]
HAPMAP	HOXA13 [HAPMAP]
COSMIC	HOXA13 [Somatic mutation (COSMIC-CGP-Sanger)]
TICdb	skeletal [Translocation breakpoints In Cancer]
HGMD	HOXA13
Genetic Association	HOXA13
CDC HuGE	HOXA13
	General knowledge
Family Browser	HOXA13 [UCSC Family Browser]
SOURCE	NM_000522
SMD	Hs.592172
SAGE	Hs.592172
GO	skeletal development [Amigo]  skeletal development
GO	transcription factor activity [Amigo]  transcription factor activity
GO	nucleus [Amigo]  nucleus
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	multicellular organismal development [Amigo]  multicellular organismal development
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
PubGene	HOXA13
TreeFam	HOXA13
CTD	3209 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	HOXA13 Related clones (RZPD - Berlin)
	PubMed
PubMed	27 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Dec 6 16:50:32 2008