HOXA4 (homeobox A4)

Identity

Other names	HOX1
	HOX1D
HGNC	HOXA4
Location	7p15.2
Location_base_pair	Starts at 27134651 and ends at 27136924 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	HOXA4   5105
Entrez_Gene	HOXA4  3201  homeobox A4
	Cards
GeneCards	HOXA4
Ensembl	ENSG00000197576 [Gene_View]  HOXA4 [Vega]
Genatlas	HOXA4
	Genomic and cartography
GoldenPath	HOXA4  -  7p15.2   chr7:27134651-27136924 -  7p15.2   [Description]    (hg18-March_2006)
Ensembl	HOXA4 - 7p15.2 [CytoView]
NCBI	Mapview
OMIM	142953 Disease map [OMIM]
HomoloGene	HOXA4
	Gene and transcription
Genbank	AI277552 [ ENTREZ ]
Genbank	AW445008 [ ENTREZ ]
Genbank	BC126994 [ ENTREZ ]
Genbank	BC160036 [ ENTREZ ]
Genbank	M74297 [ ENTREZ ]
RefSeq	NM_002141 [ SRS ]    NM_002141 [ ENTREZ ]
RefSeq	AC_000050 [ SRS ]    AC_000050 [ ENTREZ ]
RefSeq	AC_000068 [ SRS ]    AC_000068 [ ENTREZ ]
RefSeq	AC_000139 [ SRS ]    AC_000139 [ ENTREZ ]
RefSeq	NC_000007 [ SRS ]    NC_000007 [ ENTREZ ]
RefSeq	NT_007819 [ SRS ]    NT_007819 [ ENTREZ ]
RefSeq	NT_079592 [ SRS ]    NT_079592 [ ENTREZ ]
RefSeq	NW_001839003 [ SRS ]    NW_001839003 [ ENTREZ ]
RefSeq	NW_923240 [ SRS ]    NW_923240 [ ENTREZ ]
CCDS	HOXA4 CCDS - NCBI
AceView	HOXA4 AceView - NCBI
Unigene	Hs.654466 [ SRS ]    Hs.654466 [ NCBI ]
Fast-db	3180 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q00056 [ SRS]    Q00056 [ EXPASY ]     Q00056 [ INTERPRO ]     Q00056 [ UNIPROT ] Q00056 [ VarSplice FASTA ]
Prosite	PS00032 ANTENNAPEDIA [ SRS ]    PS00032 ANTENNAPEDIA [ Expasy ]
Prosite	PS00027 HOMEOBOX_1 [ SRS ]    PS00027 HOMEOBOX_1 [ Expasy ]
Prosite	PS50071 HOMEOBOX_2 [ SRS ]    PS50071 HOMEOBOX_2 [ Expasy ]
Interpro	IPR001827 Antennapedia [ SRS ]    IPR001827 Antennapedia [ EBI ]
Interpro	IPR001356 Homeobox [ SRS ]    IPR001356 Homeobox [ EBI ]
Interpro	IPR012287 Homeodomain-rel [ SRS ]    IPR012287 Homeodomain-rel [ EBI ]
CluSTr	Q00056
Pfam	PF00046 Homeobox [ SRS ]    PF00046 Homeobox [ Sanger ]    pfam00046 [ NCBI-CDD ]
Smart	SM00389 HOX [EMBL]
Prodom	PD000010 Homeobox[INRA-Toulouse]
Prodom	Q00056 HXA4_HUMAN [ Domain structure ]   Q00056 HXA4_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	Q00056
HPRD	00841
	Protein Interaction databases
DIP	Q00056
IntAct	Q00056
	Polymorphism : SNP, mutations, diseases
OMIM	142953    [ map ]
GENETests	142953
SNP	HOXA4 [dbSNP-NCBI]
SNP	NM_002141 [SNP-NCI]
SNP	HOXA4 [GeneSNPs - Utah]  HOXA4] [HGBASE - SRS]
HAPMAP	HOXA4 [HAPMAP]
HGMD	HOXA4
Genetic Association	HOXA4
CDC HuGE	HOXA4
	General knowledge
Family Browser	HOXA4 [UCSC Family Browser]
SOURCE	NM_002141
SMD	Hs.654466
SAGE	Hs.654466
GO	transcription factor activity [Amigo]  transcription factor activity
GO	nucleus [Amigo]  nucleus
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	multicellular organismal development [Amigo]  multicellular organismal development
GO	anatomical structure morphogenesis [Amigo]  anatomical structure morphogenesis
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
PubGene	HOXA4
TreeFam	HOXA4
CTD	3201 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	HOXA4 Related clones (RZPD - Berlin)
	PubMed
PubMed	20 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Dec 6 16:50:32 2008