IRX2 (iroquois homeobox 2)

Identity

Other names	IRXA2
HGNC	IRX2
Location	5p15.33
Location_base_pair	Starts at 2799880 and ends at 2804769 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	IRX2   14359
Entrez_Gene	IRX2  153572  iroquois homeobox 2
	Cards
GeneCards	IRX2
Ensembl	IRX2 [Search_View]   ENSG00000170561 [Gene_View]
Genatlas	IRX2
GeneLynx	IRX2
eGenome	IRX2
euGene	153572
	Genomic and cartography
GoldenPath	IRX2  -  5p15.33   chr5:2799880-2804769 -  5p15.33   [Description]    (hg18-March_2006)
Ensembl	IRX2 - 5p15.33 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	IRX2
	Gene and transcription
Genbank	AB188492 [ ENTREZ ]
Genbank	AY335940 [ ENTREZ ]
Genbank	BC065189 [ ENTREZ ]
RefSeq	NM_033267 [ SRS ]    NM_033267 [ ENTREZ ]
RefSeq	AC_000048 [ SRS ]    AC_000048 [ ENTREZ ]
RefSeq	AC_000137 [ SRS ]    AC_000137 [ ENTREZ ]
RefSeq	NC_000005 [ SRS ]    NC_000005 [ ENTREZ ]
RefSeq	NT_006576 [ SRS ]    NT_006576 [ ENTREZ ]
RefSeq	NW_001838924 [ SRS ]    NW_001838924 [ ENTREZ ]
RefSeq	NW_922518 [ SRS ]    NW_922518 [ ENTREZ ]
AceView	IRX2 AceView - NCBI
Unigene	Hs.282089 [ SRS ]    Hs.282089 [ NCBI ]     HS282089 [ spliceNest ]
Fast-db	1154 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q68A19 [ SRS]    Q68A19 [ EXPASY ]     Q68A19 [ INTERPRO ]     Q68A19 [ UNIPROT ]
Prosite	PS00027 HOMEOBOX_1 [ SRS ]    PS00027 HOMEOBOX_1 [ Expasy ]
Prosite	PS50071 HOMEOBOX_2 [ SRS ]    PS50071 HOMEOBOX_2 [ Expasy ]
Interpro	IPR001356 Homeobox [ SRS ]    IPR001356 Homeobox [ EBI ]
Interpro	IPR012287 Homeodomain-rel [ SRS ]    IPR012287 Homeodomain-rel [ EBI ]
Interpro	IPR003893 Iroquois_homeo [ SRS ]    IPR003893 Iroquois_homeo [ EBI ]
CluSTr	Q68A19
Pfam	PF00046 Homeobox [ SRS ]    PF00046 Homeobox [ Sanger ]    pfam00046 [ NCBI-CDD ]
Smart	SM00389 HOX [EMBL]
Smart	SM00548 IRO [EMBL]
Prodom	PD000010 Homeobox[INRA-Toulouse]
Prodom	Q68A19 Q68A19_HUMAN [ Domain structure ]   Q68A19 Q68A19_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	Q68A19
HPRD	09368
	Protein Interaction databases
DIP	Q68A19
IntAct	Q68A19
	Polymorphism : SNP, mutations, diseases
OMIM	606198    [ map ]
GENECLINICS	606198
SNP	IRX2 [dbSNP-NCBI]
SNP	NM_033267 [SNP-NCI]
SNP	IRX2 [GeneSNPs - Utah]  IRX2] [HGBASE - SRS]
HAPMAP	IRX2 [HAPMAP]
COSMIC	IRX2 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	IRX2
	General knowledge
Family Browser	IRX2 [UCSC Family Browser]
SOURCE	NM_033267
SMD	Hs.282089
SAGE	Hs.282089
GO	transcription factor activity [Amigo]  transcription factor activity
GO	nucleus [Amigo]  nucleus
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
PubGene	IRX2
TreeFam	IRX2
CTD	153572 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	IRX2 Related clones (RZPD - Berlin)
	PubMed
PubMed	6 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:18:11 2008