LNX1 (ligand of numb-protein X 1)

Identity

Other names	LNX
	MPDZ
	PDZRN2
Hugo	LNX1
Location	4q12
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
Hugo	LNX1
GDB	LNX1
Entrez_Gene	LNX1  84708  ligand of numb-protein X 1
	Cards
GeneCards	LNX1
Ensembl	LNX1 [Search_View]   ENSG00000072201 [Gene_View]
Genatlas	LNX1
GeneLynx	LNX1
eGenome	LNX1
euGene	84708
	Genomic and cartography
GoldenPath	LNX1  -  4q12   chr4:54020225-54119124 -  4q12   [Description]    (hg18-March_2006)
Ensembl	LNX1 - 4q12 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	LNX1
	Gene and transcription
Genbank	AF237782 [ ENTREZ ]
Genbank	AK056823 [ ENTREZ ]
Genbank	AY358326 [ ENTREZ ]
Genbank	BC022983 [ ENTREZ ]
Genbank	BC034737 [ ENTREZ ]
RefSeq	NM_032622 [ SRS ]    NM_032622 [ ENTREZ ]
RefSeq	AC_000047 [ SRS ]    AC_000047 [ ENTREZ ]
RefSeq	NC_000004 [ SRS ]    NC_000004 [ ENTREZ ]
RefSeq	NT_022853 [ SRS ]    NT_022853 [ ENTREZ ]
RefSeq	NW_922162 [ SRS ]    NW_922162 [ ENTREZ ]
AceView	LNX1 AceView - NCBI
Unigene	Hs.655269 [ SRS ]    Hs.655269 [ NCBI ]     HS655269 [ spliceNest ]
Fast-db	4337 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q8TBB1 [ SRS]    Q8TBB1 [ EXPASY ]     Q8TBB1 [ INTERPRO ]
Prosite	PS50106 PDZ [ SRS ]    PS50106 PDZ [ Expasy ]
Prosite	PS00518 ZF_RING_1 [ SRS ]    PS00518 ZF_RING_1 [ Expasy ]
Prosite	PS50089 ZF_RING_2 [ SRS ]    PS50089 ZF_RING_2 [ Expasy ]
Interpro	IPR001478 PDZ [ SRS ]    IPR001478 PDZ [ EBI ]
Interpro	IPR001841 Znf_RING [ SRS ]    IPR001841 Znf_RING [ EBI ]
Interpro	IPR013083 Znf_RING/FYVE/PHD [ SRS ]    IPR013083 Znf_RING/FYVE/PHD [ EBI ]
CluSTr	Q8TBB1
Pfam	PF00595 PDZ [ SRS ]    PF00595 PDZ [ Sanger ]    pfam00595 [ NCBI-CDD ]
Pfam	PF00097 zf-C3HC4 [ SRS ]    PF00097 zf-C3HC4 [ Sanger ]    pfam00097 [ NCBI-CDD ]
Smart	SM00228 PDZ [EMBL]
Smart	SM00184 RING [EMBL]
Blocks	Q8TBB1
HPRD	17287
	Protein Interaction databases
DIP	Q8TBB1
IntAct	Q8TBB1
	Polymorphism : SNP, mutations, diseases
OMIM	609732    [ map ]
GENECLINICS	609732
SNP	LNX1 [dbSNP-NCBI]
SNP	NM_032622 [SNP-NCI]
SNP	LNX1 [GeneSNPs - Utah]  LNX1] [HGBASE - SRS]
HAPMAP	LNX1 [HAPMAP]
COSMIC	LNX1 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	LNX1
	General knowledge
Family Browser	LNX1 [UCSC Family Browser]
SOURCE	NM_032622
SMD	Hs.655269
SAGE	Hs.655269
Enzyme	6.3.2.- [ Enzyme-SRS ]   6.3.2.- [ Brenda-SRS ]   6.3.2.- [ KEGG ]   6.3.2.- [ WIT ]
GO	protein binding [Amigo]  protein binding
GO	cytoplasm [Amigo]  cytoplasm
GO	ubiquitin cycle [Amigo]  ubiquitin cycle
GO	zinc ion binding [Amigo]  zinc ion binding
GO	ligase activity [Amigo]  ligase activity
GO	metal ion binding [Amigo]  metal ion binding
KEGG	Tryptophan metabolism
PubGene	LNX1
TreeFam	LNX1
CTD	84708 [Comparative Genomics Database]
	Other databases
	Probes
Probe	LNX1 Related clones (RZPD - Berlin)
	PubMed
PubMed	15 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Thu May 22 20:14:33 2008