LSM1 (LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae))

Identity

Other names	CASM
	YJL124C
HGNC	LSM1
Location	8p11.2
Location_base_pair	Starts at 38140015 and ends at 38153183 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	LSM1   20472
Entrez_Gene	LSM1  27257  LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)
	Cards
GeneCards	LSM1
Ensembl	ENSG00000175324 [Gene_View]  LSM1 [Vega]
Genatlas	LSM1
	Genomic and cartography
GoldenPath	LSM1  -  8p11.2   chr8:38140015-38153183 -  8p12   [Description]    (hg18-March_2006)
Ensembl	LSM1 - 8p12 [CytoView]
NCBI	Mapview
OMIM	607281 Disease map [OMIM]
HomoloGene	LSM1
	Gene and transcription
Genbank	AF000177 [ ENTREZ ]
Genbank	AF147348 [ ENTREZ ]
Genbank	AJ238094 [ ENTREZ ]
Genbank	AK312159 [ ENTREZ ]
Genbank	BC001767 [ ENTREZ ]
RefSeq	NM_014462 [ SRS ]    NM_014462 [ ENTREZ ]
RefSeq	AC_000051 [ SRS ]    AC_000051 [ ENTREZ ]
RefSeq	AC_000140 [ SRS ]    AC_000140 [ ENTREZ ]
RefSeq	NC_000008 [ SRS ]    NC_000008 [ ENTREZ ]
RefSeq	NT_007995 [ SRS ]    NT_007995 [ ENTREZ ]
RefSeq	NW_001839128 [ SRS ]    NW_001839128 [ ENTREZ ]
RefSeq	NW_923907 [ SRS ]    NW_923907 [ ENTREZ ]
CCDS	LSM1 CCDS - NCBI
AceView	LSM1 AceView - NCBI
Unigene	Hs.425311 [ SRS ]    Hs.425311 [ NCBI ]
Fast-db	3816 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	O15116 [ SRS]    O15116 [ EXPASY ]     O15116 [ INTERPRO ]     O15116 [ UNIPROT ] O15116 [ VarSplice FASTA ]
Interpro	IPR006649 Euk_arc_LSM_core [ SRS ]    IPR006649 Euk_arc_LSM_core [ EBI ]
Interpro	IPR001163 LSM_snRNP_core [ SRS ]    IPR001163 LSM_snRNP_core [ EBI ]
CluSTr	O15116
Pfam	PF01423 LSM [ SRS ]    PF01423 LSM [ Sanger ]    pfam01423 [ NCBI-CDD ]
Smart	SM00651 Sm [EMBL]
Prodom	PD020287 snRNP[INRA-Toulouse]
Prodom	O15116 LSM1_HUMAN [ Domain structure ]   O15116 LSM1_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	O15116
HPRD	06281
	Protein Interaction databases
DIP	O15116
IntAct	O15116
	Polymorphism : SNP, mutations, diseases
OMIM	607281    [ map ]
GENETests	607281
SNP	LSM1 [dbSNP-NCBI]
SNP	NM_014462 [SNP-NCI]
SNP	LSM1 [GeneSNPs - Utah]  LSM1] [HGBASE - SRS]
HAPMAP	LSM1 [HAPMAP]
HGMD	LSM1
Genetic Association	LSM1
CDC HuGE	LSM1
	General knowledge
Family Browser	LSM1 [UCSC Family Browser]
SOURCE	NM_014462
SMD	Hs.425311
SAGE	Hs.425311
GO	RNA binding [Amigo]  RNA binding
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	mRNA processing [Amigo]  mRNA processing
GO	RNA splicing [Amigo]  RNA splicing
GO	ribonucleoprotein complex [Amigo]  ribonucleoprotein complex
GO	RNA splicing factor activity, transesterification mechanism [Amigo]  RNA splicing factor activity, transesterification mechanism
PubGene	LSM1
TreeFam	LSM1
CTD	27257 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	LSM1 Related clones (RZPD - Berlin)
	PubMed
PubMed	17 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Dec 6 16:55:00 2008