LSM4 (LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae))

Identity

Other names	YER112W
HGNC	LSM4
Location	19p13.11
Location_base_pair	Starts at 18278717 and ends at 18294958 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	LSM4   17259
Entrez_Gene	LSM4  25804  LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
	Cards
GeneCards	LSM4
Ensembl	ENSG00000130520 [Gene_View]  LSM4 [Vega]
Genatlas	LSM4
	Genomic and cartography
GoldenPath	LSM4  -  19p13.11   chr19:18278717-18294958 -  19p13.11   [Description]    (hg18-March_2006)
Ensembl	LSM4 - 19p13.11 [CytoView]
NCBI	Mapview
OMIM	607284 Disease map [OMIM]
HomoloGene	LSM4
	Gene and transcription
Genbank	AF117235 [ ENTREZ ]
Genbank	AF182290 [ ENTREZ ]
Genbank	AF251218 [ ENTREZ ]
Genbank	AJ238096 [ ENTREZ ]
Genbank	BC000387 [ ENTREZ ]
RefSeq	NM_012321 [ SRS ]    NM_012321 [ ENTREZ ]
RefSeq	AC_000062 [ SRS ]    AC_000062 [ ENTREZ ]
RefSeq	AC_000151 [ SRS ]    AC_000151 [ ENTREZ ]
RefSeq	NC_000019 [ SRS ]    NC_000019 [ ENTREZ ]
RefSeq	NT_011295 [ SRS ]    NT_011295 [ ENTREZ ]
RefSeq	NW_001838484 [ SRS ]    NW_001838484 [ ENTREZ ]
RefSeq	NW_927195 [ SRS ]    NW_927195 [ ENTREZ ]
CCDS	LSM4 CCDS - NCBI
AceView	LSM4 AceView - NCBI
Unigene	Hs.515255 [ SRS ]    Hs.515255 [ NCBI ]
Fast-db	9056 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q9Y4Z0 [ SRS]    Q9Y4Z0 [ EXPASY ]     Q9Y4Z0 [ INTERPRO ]     Q9Y4Z0 [ UNIPROT ] Q9Y4Z0 [ VarSplice FASTA ]
Interpro	IPR006649 Euk_arc_LSM_core [ SRS ]    IPR006649 Euk_arc_LSM_core [ EBI ]
Interpro	IPR001163 LSM_snRNP_core [ SRS ]    IPR001163 LSM_snRNP_core [ EBI ]
CluSTr	Q9Y4Z0
Pfam	PF01423 LSM [ SRS ]    PF01423 LSM [ Sanger ]    pfam01423 [ NCBI-CDD ]
Smart	SM00651 Sm [EMBL]
Prodom	PD020287 snRNP[INRA-Toulouse]
Prodom	Q9Y4Z0 LSM4_HUMAN [ Domain structure ]   Q9Y4Z0 LSM4_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	Q9Y4Z0
HPRD	06284
	Protein Interaction databases
DIP	Q9Y4Z0
IntAct	Q9Y4Z0
	Polymorphism : SNP, mutations, diseases
OMIM	607284    [ map ]
GENETests	607284
SNP	LSM4 [dbSNP-NCBI]
SNP	NM_012321 [SNP-NCI]
SNP	LSM4 [GeneSNPs - Utah]  LSM4] [HGBASE - SRS]
HAPMAP	LSM4 [HAPMAP]
HGMD	LSM4
Genetic Association	LSM4
CDC HuGE	LSM4
	General knowledge
Family Browser	LSM4 [UCSC Family Browser]
SOURCE	NM_012321
SMD	Hs.515255
SAGE	Hs.515255
GO	RNA binding [Amigo]  RNA binding
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	snRNP U6 [Amigo]  snRNP U6
GO	mRNA processing [Amigo]  mRNA processing
GO	RNA splicing [Amigo]  RNA splicing
PubGene	LSM4
TreeFam	LSM4
CTD	25804 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	LSM4 Related clones (RZPD - Berlin)
	PubMed
PubMed	14 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Dec 6 16:55:00 2008