MMP25 (matrix metallopeptidase 25)

Identity

Other names	MMP20
	MMP20A
	MMPL1
	MT-MMP6
	MT6-MMP
HGNC	MMP25
Location	16p13.3
Location_base_pair	Starts at 3036683 and ends at 3050725 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	MMP25   14246
Entrez_Gene	MMP25  64386  matrix metallopeptidase 25
	Cards
GeneCards	MMP25
Ensembl	MMP25 [Search_View]   ENSG00000008516 [Gene_View]
Genatlas	MMP25
GeneLynx	MMP25
eGenome	MMP25
euGene	64386
	Genomic and cartography
GoldenPath	MMP25  -  16p13.3   chr16:3036683-3050725 +  16p13.3   [Description]    (hg18-March_2006)
Ensembl	MMP25 - 16p13.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	MMP25
	Gene and transcription
Genbank	AB042328 [ ENTREZ ]
Genbank	AF145442 [ ENTREZ ]
Genbank	AF185270 [ ENTREZ ]
Genbank	AJ003144 [ ENTREZ ]
Genbank	AJ239053 [ ENTREZ ]
RefSeq	NM_022468 [ SRS ]    NM_022468 [ ENTREZ ]
RefSeq	AC_000059 [ SRS ]    AC_000059 [ ENTREZ ]
RefSeq	AC_000148 [ SRS ]    AC_000148 [ ENTREZ ]
RefSeq	NC_000016 [ SRS ]    NC_000016 [ ENTREZ ]
RefSeq	NT_037887 [ SRS ]    NT_037887 [ ENTREZ ]
RefSeq	NW_001838341 [ SRS ]    NW_001838341 [ ENTREZ ]
RefSeq	NW_926018 [ SRS ]    NW_926018 [ ENTREZ ]
AceView	MMP25 AceView - NCBI
Unigene	Hs.654979 [ SRS ]    Hs.654979 [ NCBI ]     HS654979 [ spliceNest ]
Fast-db	2618 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	O43923 [ SRS]    O43923 [ EXPASY ]     O43923 [ INTERPRO ]     O43923 [ UNIPROT ]
Interpro	IPR001818 Pept_M10A_M12B [ SRS ]    IPR001818 Pept_M10A_M12B [ EBI ]
Interpro	IPR006026 Peptidase_M [ SRS ]    IPR006026 Peptidase_M [ EBI ]
CluSTr	O43923
Pfam	PF00413 Peptidase_M10 [ SRS ]    PF00413 Peptidase_M10 [ Sanger ]    pfam00413 [ NCBI-CDD ]
Smart	SM00235 ZnMc [EMBL]
Blocks	O43923
HPRD	07090
	Protein Interaction databases
DIP	O43923
IntAct	O43923
	Polymorphism : SNP, mutations, diseases
OMIM	608482    [ map ]
GENECLINICS	608482
SNP	MMP25 [dbSNP-NCBI]
SNP	NM_022468 [SNP-NCI]
SNP	MMP25 [GeneSNPs - Utah]  MMP25] [HGBASE - SRS]
HAPMAP	MMP25 [HAPMAP]
COSMIC	MMP25 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	MMP25
	General knowledge
Family Browser	MMP25 [UCSC Family Browser]
SOURCE	NM_022468
SMD	Hs.654979
SAGE	Hs.654979
GO	metalloendopeptidase activity [Amigo]  metalloendopeptidase activity
GO	calcium ion binding [Amigo]  calcium ion binding
GO	extracellular region [Amigo]  extracellular region
GO	proteinaceous extracellular matrix [Amigo]  proteinaceous extracellular matrix
GO	proteinaceous extracellular matrix [Amigo]  proteinaceous extracellular matrix
GO	plasma membrane [Amigo]  plasma membrane
GO	proteolysis [Amigo]  proteolysis
GO	proteolysis [Amigo]  proteolysis
GO	inflammatory response [Amigo]  inflammatory response
GO	metabolic process [Amigo]  metabolic process
GO	zinc ion binding [Amigo]  zinc ion binding
GO	cell surface [Amigo]  cell surface
GO	anchored to membrane [Amigo]  anchored to membrane
PubGene	MMP25
TreeFam	MMP25
CTD	64386 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	MMP25 Related clones (RZPD - Berlin)
	PubMed
PubMed	15 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:21:57 2008