MSR1 (macrophage scavenger receptor 1)

Identity

Other names	CD204
	SCARA1
	SR-A
	phSR1
	phSR2
HGNC	MSR1
Location	8p22
Location_base_pair	Starts at 16041197 and ends at 16094671 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	MSR1   7376
Entrez_Gene	MSR1  4481  macrophage scavenger receptor 1
	Cards
GeneCards	MSR1
Ensembl	ENSG00000038945 [Gene_View]  MSR1 [Vega]
Genatlas	MSR1
	Genomic and cartography
GoldenPath	MSR1  -  8p22   chr8:16041197-16094671 -  8p22   [Description]    (hg18-March_2006)
Ensembl	MSR1 - 8p22 [CytoView]
NCBI	Mapview
OMIM	153622 Disease map [OMIM]
OMIM	176807 Disease map [OMIM]
HomoloGene	MSR1
	Gene and transcription
Genbank	AF037351 [ ENTREZ ]
Genbank	BC063878 [ ENTREZ ]
Genbank	D13264 [ ENTREZ ]
Genbank	D13265 [ ENTREZ ]
Genbank	D90187 [ ENTREZ ]
RefSeq	NM_002445 [ SRS ]    NM_002445 [ ENTREZ ]
RefSeq	NM_138715 [ SRS ]    NM_138715 [ ENTREZ ]
RefSeq	NM_138716 [ SRS ]    NM_138716 [ ENTREZ ]
RefSeq	AC_000051 [ SRS ]    AC_000051 [ ENTREZ ]
RefSeq	AC_000140 [ SRS ]    AC_000140 [ ENTREZ ]
RefSeq	NC_000008 [ SRS ]    NC_000008 [ ENTREZ ]
RefSeq	NT_030737 [ SRS ]    NT_030737 [ ENTREZ ]
RefSeq	NW_001839126 [ SRS ]    NW_001839126 [ ENTREZ ]
RefSeq	NW_923907 [ SRS ]    NW_923907 [ ENTREZ ]
CCDS	MSR1 CCDS - NCBI
AceView	MSR1 AceView - NCBI
Unigene	Hs.147635 [ SRS ]    Hs.147635 [ NCBI ]
Fast-db	1552 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	O60505 [ SRS]    O60505 [ EXPASY ]     O60505 [ INTERPRO ]     O60505 [ UNIPROT ] O60505 [ VarSplice FASTA ]
Prosite	PS50287 SRCR_2 [ SRS ]    PS50287 SRCR_2 [ Expasy ]
Interpro	IPR008161 Clg_helix [ SRS ]    IPR008161 Clg_helix [ EBI ]
Interpro	IPR008160 Collagen [ SRS ]    IPR008160 Collagen [ EBI ]
Interpro	IPR003543 Macro_scav_rcpt [ SRS ]    IPR003543 Macro_scav_rcpt [ EBI ]
Interpro	IPR001190 Srcr_rcpt [ SRS ]    IPR001190 Srcr_rcpt [ EBI ]
Interpro	IPR017448 Srcr_rcpt-rel [ SRS ]    IPR017448 Srcr_rcpt-rel [ EBI ]
CluSTr	O60505
Pfam	PF01391 Collagen [ SRS ]    PF01391 Collagen [ Sanger ]    pfam01391 [ NCBI-CDD ]
Pfam	PF03523 Macscav_rec [ SRS ]    PF03523 Macscav_rec [ Sanger ]    pfam03523 [ NCBI-CDD ]
Pfam	PF00530 SRCR [ SRS ]    PF00530 SRCR [ Sanger ]    pfam00530 [ NCBI-CDD ]
Smart	SM00202 SR [EMBL]
Prodom	PD000007 Clg_helix[INRA-Toulouse]
Prodom	O60505 O60505_HUMAN [ Domain structure ]   O60505 O60505_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	O60505
HPRD	01092
	Protein Interaction databases
DIP	O60505
IntAct	O60505
	Polymorphism : SNP, mutations, diseases
OMIM	153622    [ map ]
OMIM	176807    [ map ]
GENETests	153622
GENETests	176807
SNP	MSR1 [dbSNP-NCBI]
SNP	NM_002445 [SNP-NCI]
SNP	NM_138715 [SNP-NCI]
SNP	NM_138716 [SNP-NCI]
SNP	MSR1 [GeneSNPs - Utah]  MSR1] [HGBASE - SRS]
HAPMAP	MSR1 [HAPMAP]
HGMD	MSR1
Genetic Association	MSR1
CDC HuGE	MSR1
	General knowledge
Family Browser	MSR1 [UCSC Family Browser]
SOURCE	NM_002445
SOURCE	NM_138715
SOURCE	NM_138716
SMD	Hs.147635
SAGE	Hs.147635
GO	receptor activity [Amigo]  receptor activity
GO	scavenger receptor activity [Amigo]  scavenger receptor activity
GO	scavenger receptor activity [Amigo]  scavenger receptor activity
GO	lipid transporter activity [Amigo]  lipid transporter activity
GO	cytoplasm [Amigo]  cytoplasm
GO	integral to plasma membrane [Amigo]  integral to plasma membrane
GO	phosphate transport [Amigo]  phosphate transport
GO	receptor-mediated endocytosis [Amigo]  receptor-mediated endocytosis
GO	receptor-mediated endocytosis [Amigo]  receptor-mediated endocytosis
GO	membrane [Amigo]  membrane
PubGene	MSR1
TreeFam	MSR1
CTD	4481 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	MSR1 Related clones (RZPD - Berlin)
	PubMed
PubMed	46 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Dec 6 16:57:18 2008