ODC1 (ornithine decarboxylase 1)

Identity

Other names	ODC
HGNC	ODC1
Location	2p25
Location_base_pair	Starts at 10497959 and ends at 10505904 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	ODC1   8109
Entrez_Gene	ODC1  4953  ornithine decarboxylase 1
	Cards
GeneCards	ODC1
Ensembl	ODC1 [Search_View]   ENSG00000115758 [Gene_View]
Genatlas	ODC1
GeneLynx	ODC1
eGenome	ODC1
euGene	4953
	Genomic and cartography
GoldenPath	ODC1  -  2p25   chr2:10497959-10505904 -  2p25.1   [Description]    (hg18-March_2006)
Ensembl	ODC1 - 2p25.1 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	ODC1
	Gene and transcription
Genbank	AK292352 [ ENTREZ ]
Genbank	AK312766 [ ENTREZ ]
Genbank	BC014562 [ ENTREZ ]
Genbank	BC025296 [ ENTREZ ]
Genbank	CR613073 [ ENTREZ ]
RefSeq	NM_002539 [ SRS ]    NM_002539 [ ENTREZ ]
RefSeq	AC_000045 [ SRS ]    AC_000045 [ ENTREZ ]
RefSeq	AC_000134 [ SRS ]    AC_000134 [ ENTREZ ]
RefSeq	NC_000002 [ SRS ]    NC_000002 [ ENTREZ ]
RefSeq	NT_005334 [ SRS ]    NT_005334 [ ENTREZ ]
RefSeq	NW_001838766 [ SRS ]    NW_001838766 [ ENTREZ ]
RefSeq	NW_927719 [ SRS ]    NW_927719 [ ENTREZ ]
AceView	ODC1 AceView - NCBI
Unigene	Hs.467701 [ SRS ]    Hs.467701 [ NCBI ]     HS467701 [ spliceNest ]
Fast-db	1289 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P11926 [ SRS]    P11926 [ EXPASY ]     P11926 [ INTERPRO ]     P11926 [ UNIPROT ]
Prosite	PS00878 ODR_DC_2_1 [ SRS ]    PS00878 ODR_DC_2_1 [ Expasy ]
Prosite	PS00879 ODR_DC_2_2 [ SRS ]    PS00879 ODR_DC_2_2 [ Expasy ]
Interpro	IPR000183 De-COase2 [ SRS ]    IPR000183 De-COase2 [ EBI ]
Interpro	IPR002433 Orn_de-COase [ SRS ]    IPR002433 Orn_de-COase [ EBI ]
CluSTr	P11926
Pfam	PF02784 Orn_Arg_deC_N [ SRS ]    PF02784 Orn_Arg_deC_N [ Sanger ]    pfam02784 [ NCBI-CDD ]
Pfam	PF00278 Orn_DAP_Arg_deC [ SRS ]    PF00278 Orn_DAP_Arg_deC [ Sanger ]    pfam00278 [ NCBI-CDD ]
Blocks	P11926
PDB	1D7K [ SRS ]    1D7K [ PdbSum ],   1D7K [ IMB ]   1D7K [ RSDB ]
PDB	2ON3 [ SRS ]    2ON3 [ PdbSum ],   2ON3 [ IMB ]   2ON3 [ RSDB ]
PDB	2OO0 [ SRS ]    2OO0 [ PdbSum ],   2OO0 [ IMB ]   2OO0 [ RSDB ]
HPRD	01324
	Protein Interaction databases
DIP	P11926
IntAct	P11926
	Polymorphism : SNP, mutations, diseases
OMIM	114500;165640    [ map ]
GENECLINICS	114500;165640
SNP	ODC1 [dbSNP-NCBI]
SNP	NM_002539 [SNP-NCI]
SNP	ODC1 [GeneSNPs - Utah]  ODC1] [HGBASE - SRS]
HAPMAP	ODC1 [HAPMAP]
HGMD	ODC1
	General knowledge
Family Browser	ODC1 [UCSC Family Browser]
SOURCE	NM_002539
SMD	Hs.467701
SAGE	Hs.467701
GO	kidney development [Amigo]  kidney development
GO	ornithine decarboxylase activity [Amigo]  ornithine decarboxylase activity
GO	protein binding [Amigo]  protein binding
GO	cellular_component [Amigo]  cellular_component
GO	cytosol [Amigo]  cytosol
GO	polyamine biosynthetic process [Amigo]  polyamine biosynthetic process
GO	positive regulation of cell proliferation [Amigo]  positive regulation of cell proliferation
GO	lyase activity [Amigo]  lyase activity
KEGG	Urea cycle and metabolism of amino groups
KEGG	Arginine and proline metabolism
PubGene	ODC1
TreeFam	ODC1
CTD	4953 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	ODC1 Related clones (RZPD - Berlin)
	PubMed
PubMed	43 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:24:13 2008