PEX5 (peroxisomal biogenesis factor 5)

Identity

Other names	PTS1R
	PXR1
HGNC	PEX5
Location	12p
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	PEX5   9719
Entrez_Gene	PEX5  5830  peroxisomal biogenesis factor 5
	Cards
GeneCards	PEX5
Ensembl	PEX5 [Search_View]   ENSG00000139197 [Gene_View]
Genatlas	PEX5
GeneLynx	PEX5
eGenome	PEX5
euGene	5830
	Genomic and cartography
GoldenPath	PEX5  -  12p   chr12:7234224-7255343 +  12p13.31   [Description]    (hg18-March_2006)
Ensembl	PEX5 - 12p13.31 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	PEX5
	Gene and transcription
Genbank	AK225126 [ ENTREZ ]
Genbank	AK292256 [ ENTREZ ]
Genbank	AK302742 [ ENTREZ ]
Genbank	AK303515 [ ENTREZ ]
Genbank	AK312317 [ ENTREZ ]
RefSeq	NM_000319 [ SRS ]    NM_000319 [ ENTREZ ]
RefSeq	AC_000055 [ SRS ]    AC_000055 [ ENTREZ ]
RefSeq	AC_000144 [ SRS ]    AC_000144 [ ENTREZ ]
RefSeq	NC_000012 [ SRS ]    NC_000012 [ ENTREZ ]
RefSeq	NT_009714 [ SRS ]    NT_009714 [ ENTREZ ]
RefSeq	NW_001838051 [ SRS ]    NW_001838051 [ ENTREZ ]
RefSeq	NW_925295 [ SRS ]    NW_925295 [ ENTREZ ]
AceView	PEX5 AceView - NCBI
Unigene	Hs.567327 [ SRS ]    Hs.567327 [ NCBI ]     HS567327 [ spliceNest ]
Fast-db	1691 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P50542 [ SRS]    P50542 [ EXPASY ]     P50542 [ INTERPRO ]     P50542 [ UNIPROT ]
Prosite	PS50005 TPR [ SRS ]    PS50005 TPR [ Expasy ]
Prosite	PS50293 TPR_REGION [ SRS ]    PS50293 TPR_REGION [ Expasy ]
Interpro	IPR001440 TPR-1 [ SRS ]    IPR001440 TPR-1 [ EBI ]
Interpro	IPR013026 TPR_region [ SRS ]    IPR013026 TPR_region [ EBI ]
CluSTr	P50542
Pfam	PF00515 TPR_1 [ SRS ]    PF00515 TPR_1 [ Sanger ]    pfam00515 [ NCBI-CDD ]
Smart	SM00028 TPR [EMBL]
Blocks	P50542
PDB	1FCH [ SRS ]    1FCH [ PdbSum ],   1FCH [ IMB ]   1FCH [ RSDB ]
PDB	2C0L [ SRS ]    2C0L [ PdbSum ],   2C0L [ IMB ]   2C0L [ RSDB ]
PDB	2C0M [ SRS ]    2C0M [ PdbSum ],   2C0M [ IMB ]   2C0M [ RSDB ]
PDB	2J9Q [ SRS ]    2J9Q [ PdbSum ],   2J9Q [ IMB ]   2J9Q [ RSDB ]
HPRD	02684
	Protein Interaction databases
DIP	P50542
IntAct	P50542
	Polymorphism : SNP, mutations, diseases
OMIM	202370;214100;600414    [ map ]
GENECLINICS	202370;214100;600414
SNP	PEX5 [dbSNP-NCBI]
SNP	NM_000319 [SNP-NCI]
SNP	PEX5 [GeneSNPs - Utah]  PEX5] [HGBASE - SRS]
HAPMAP	PEX5 [HAPMAP]
HGMD	PEX5
	General knowledge
Family Browser	PEX5 [UCSC Family Browser]
SOURCE	NM_000319
SMD	Hs.567327
SAGE	Hs.567327
GO	protein binding [Amigo]  protein binding
GO	cytoplasm [Amigo]  cytoplasm
GO	peroxisome [Amigo]  peroxisome
GO	peroxisomal membrane [Amigo]  peroxisomal membrane
GO	protein transport [Amigo]  protein transport
GO	membrane [Amigo]  membrane
PubGene	PEX5
TreeFam	PEX5
CTD	5830 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	PEX5 Related clones (RZPD - Berlin)
	PubMed
PubMed	41 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:24:24 2008