PHF17 (PHD finger protein 17)

Identity

Other names	FLJ22479
	JADE1
	KIAA1807
HGNC	PHF17
Location	4q26-q27
Location_base_pair	Starts at 129950229 and ends at 130005237 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	PHF17   30027
Entrez_Gene	PHF17  79960  PHD finger protein 17
	Cards
GeneCards	PHF17
Ensembl	PHF17 [Search_View]   ENSG00000077684 [Gene_View]
Genatlas	PHF17
GeneLynx	PHF17
eGenome	PHF17
euGene	79960
	Genomic and cartography
GoldenPath	PHF17  -     chr4:129950229-130005237 +  4q28.2   [Description]    (hg18-March_2006)
Ensembl	PHF17 - 4q28.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	PHF17
	Gene and transcription
Genbank	AB058710 [ ENTREZ ]
Genbank	AF520952 [ ENTREZ ]
Genbank	AK026132 [ ENTREZ ]
Genbank	AK027620 [ ENTREZ ]
Genbank	AK074986 [ ENTREZ ]
RefSeq	NM_024900 [ SRS ]    NM_024900 [ ENTREZ ]
RefSeq	NM_199320 [ SRS ]    NM_199320 [ ENTREZ ]
RefSeq	AC_000047 [ SRS ]    AC_000047 [ ENTREZ ]
RefSeq	AC_000136 [ SRS ]    AC_000136 [ ENTREZ ]
RefSeq	NC_000004 [ SRS ]    NC_000004 [ ENTREZ ]
RefSeq	NT_016354 [ SRS ]    NT_016354 [ ENTREZ ]
RefSeq	NW_001838920 [ SRS ]    NW_001838920 [ ENTREZ ]
RefSeq	NW_922217 [ SRS ]    NW_922217 [ ENTREZ ]
AceView	PHF17 AceView - NCBI
Unigene	Hs.12420 [ SRS ]    Hs.12420 [ NCBI ]     HS12420 [ spliceNest ]
Fast-db	9511 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q6IE81 [ SRS]    Q6IE81 [ EXPASY ]     Q6IE81 [ INTERPRO ]     Q6IE81 [ UNIPROT ]
Prosite	PS01359 ZF_PHD_1 [ SRS ]    PS01359 ZF_PHD_1 [ Expasy ]
Prosite	PS50016 ZF_PHD_2 [ SRS ]    PS50016 ZF_PHD_2 [ Expasy ]
Interpro	IPR001965 Znf_PHD [ SRS ]    IPR001965 Znf_PHD [ EBI ]
Interpro	IPR013083 Znf_RING/FYVE/PHD [ SRS ]    IPR013083 Znf_RING/FYVE/PHD [ EBI ]
CluSTr	Q6IE81
Pfam	PF00628 PHD [ SRS ]    PF00628 PHD [ Sanger ]    pfam00628 [ NCBI-CDD ]
Smart	SM00249 PHD [EMBL]
Blocks	Q6IE81
HPRD	10151
	Protein Interaction databases
DIP	Q6IE81
IntAct	Q6IE81
	Polymorphism : SNP, mutations, diseases
OMIM	610514    [ map ]
GENECLINICS	610514
SNP	PHF17 [dbSNP-NCBI]
SNP	NM_024900 [SNP-NCI]
SNP	NM_199320 [SNP-NCI]
SNP	PHF17 [GeneSNPs - Utah]  PHF17] [HGBASE - SRS]
HAPMAP	PHF17 [HAPMAP]
HGMD	PHF17
	General knowledge
Family Browser	PHF17 [UCSC Family Browser]
SOURCE	NM_024900
SOURCE	NM_199320
SMD	Hs.12420
SAGE	Hs.12420
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	cytoplasm [Amigo]  cytoplasm
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	apoptosis [Amigo]  apoptosis
GO	response to stress [Amigo]  response to stress
GO	zinc ion binding [Amigo]  zinc ion binding
GO	negative regulation of cell growth [Amigo]  negative regulation of cell growth
GO	metal ion binding [Amigo]  metal ion binding
PubGene	PHF17
TreeFam	PHF17
CTD	79960 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	PHF17 Related clones (RZPD - Berlin)
	PubMed
PubMed	12 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:25:34 2008