PRPF4B (PRP4 pre-mRNA processing factor 4 homolog B (yeast))

Identity

Other names	KIAA0536
	PR4H
	PRP4
	PRP4H
	PRP4K
	dJ1013A10.1
HGNC	PRPF4B
Location	6p25.2
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	PRPF4B   17346
Entrez_Gene	PRPF4B  8899  PRP4 pre-mRNA processing factor 4 homolog B (yeast)
	Cards
GeneCards	PRPF4B
Ensembl	PRPF4B [Search_View]   ENSG00000112739 [Gene_View]
Genatlas	PRPF4B
GeneLynx	PRPF4B
eGenome	PRPF4B
euGene	8899
	Genomic and cartography
GoldenPath	PRPF4B  -  6p25.2   chr6:3966568-4010216 +  6p25.2   [Description]    (hg18-March_2006)
Ensembl	PRPF4B - 6p25.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	PRPF4B
	Gene and transcription
Genbank	AB011108 [ ENTREZ ]
Genbank	AF283465 [ ENTREZ ]
Genbank	AK291244 [ ENTREZ ]
Genbank	AY029347 [ ENTREZ ]
Genbank	BC009844 [ ENTREZ ]
RefSeq	NM_003913 [ SRS ]    NM_003913 [ ENTREZ ]
RefSeq	AC_000049 [ SRS ]    AC_000049 [ ENTREZ ]
RefSeq	AC_000138 [ SRS ]    AC_000138 [ ENTREZ ]
RefSeq	NC_000006 [ SRS ]    NC_000006 [ ENTREZ ]
RefSeq	NT_034880 [ SRS ]    NT_034880 [ ENTREZ ]
RefSeq	NW_001838973 [ SRS ]    NW_001838973 [ ENTREZ ]
RefSeq	NW_922984 [ SRS ]    NW_922984 [ ENTREZ ]
AceView	PRPF4B AceView - NCBI
Unigene	Hs.159014 [ SRS ]    Hs.159014 [ NCBI ]     HS159014 [ spliceNest ]
Fast-db	1377 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q13523 [ SRS]    Q13523 [ EXPASY ]     Q13523 [ INTERPRO ]     Q13523 [ UNIPROT ]
Prosite	PS00107 PROTEIN_KINASE_ATP [ SRS ]    PS00107 PROTEIN_KINASE_ATP [ Expasy ]
Prosite	PS50011 PROTEIN_KINASE_DOM [ SRS ]    PS50011 PROTEIN_KINASE_DOM [ Expasy ]
Prosite	PS00108 PROTEIN_KINASE_ST [ SRS ]    PS00108 PROTEIN_KINASE_ST [ Expasy ]
Interpro	IPR000719 Prot_kinase_core [ SRS ]    IPR000719 Prot_kinase_core [ EBI ]
Interpro	IPR017441 Protein_kinase_ATP_bd_CS [ SRS ]    IPR017441 Protein_kinase_ATP_bd_CS [ EBI ]
Interpro	IPR017442 Se/Thr_pkinase-rel [ SRS ]    IPR017442 Se/Thr_pkinase-rel [ EBI ]
Interpro	IPR008271 Ser_thr_pkin_AS [ SRS ]    IPR008271 Ser_thr_pkin_AS [ EBI ]
Interpro	IPR002290 Ser_thr_pkinase [ SRS ]    IPR002290 Ser_thr_pkinase [ EBI ]
CluSTr	Q13523
Pfam	PF00069 Pkinase [ SRS ]    PF00069 Pkinase [ Sanger ]    pfam00069 [ NCBI-CDD ]
Smart	SM00220 S_TKc [EMBL]
Prodom	PD000001 Prot_kinase[INRA-Toulouse]
Prodom	Q13523 PRP4B_HUMAN [ Domain structure ]   Q13523 PRP4B_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	Q13523
HPRD	09087
	Protein Interaction databases
DIP	Q13523
IntAct	Q13523
	Polymorphism : SNP, mutations, diseases
OMIM	602338    [ map ]
GENECLINICS	602338
SNP	PRPF4B [dbSNP-NCBI]
SNP	NM_003913 [SNP-NCI]
SNP	PRPF4B [GeneSNPs - Utah]  PRPF4B] [HGBASE - SRS]
HAPMAP	PRPF4B [HAPMAP]
COSMIC	PRPF4B [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	PRPF4B
	General knowledge
Family Browser	PRPF4B [UCSC Family Browser]
SOURCE	NM_003913
SMD	Hs.159014
SAGE	Hs.159014
Enzyme	2.7.11.1 [ Enzyme-Expasy ]   2.7.11.1 [ Enzyme-SRS ]   2.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   2.7.11.1 [ WIT ]
GO	nucleotide binding [Amigo]  nucleotide binding
GO	protein kinase activity [Amigo]  protein kinase activity
GO	protein serine/threonine kinase activity [Amigo]  protein serine/threonine kinase activity
GO	protein binding [Amigo]  protein binding
GO	ATP binding [Amigo]  ATP binding
GO	nucleus [Amigo]  nucleus
GO	spliceosome [Amigo]  spliceosome
GO	mRNA processing [Amigo]  mRNA processing
GO	protein amino acid phosphorylation [Amigo]  protein amino acid phosphorylation
GO	protein amino acid phosphorylation [Amigo]  protein amino acid phosphorylation
GO	RNA splicing [Amigo]  RNA splicing
GO	transferase activity [Amigo]  transferase activity
PubGene	PRPF4B
TreeFam	PRPF4B
CTD	8899 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	PRPF4B Related clones (RZPD - Berlin)
	PubMed
PubMed	20 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:26:56 2008