PTPRA (protein tyrosine phosphatase, receptor type, A)

Identity

Other names	HEPTP
	HLPR
	HPTPA
	HPTPalpha
	LRP
	PTPA
	PTPRL2
	R-PTP-alpha
	RPTPA
HGNC	PTPRA
Location	20p13
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	PTPRA   9664
Entrez_Gene	PTPRA  5786  protein tyrosine phosphatase, receptor type, A
	Cards
GeneCards	PTPRA
Ensembl	PTPRA [Search_View]   ENSG00000132670 [Gene_View]
Genatlas	PTPRA
GeneLynx	PTPRA
eGenome	PTPRA
euGene	5786
	Genomic and cartography
GoldenPath	PTPRA  -  20p13   chr20:2792841-2967315 +  20p13   [Description]    (hg18-March_2006)
Ensembl	PTPRA - 20p13 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	PTPRA
	Gene and transcription
Genbank	AB209702 [ ENTREZ ]
Genbank	AI284972 [ ENTREZ ]
Genbank	AK090743 [ ENTREZ ]
Genbank	AK290233 [ ENTREZ ]
Genbank	BC027308 [ ENTREZ ]
RefSeq	NM_002836 [ SRS ]    NM_002836 [ ENTREZ ]
RefSeq	NM_080840 [ SRS ]    NM_080840 [ ENTREZ ]
RefSeq	NM_080841 [ SRS ]    NM_080841 [ ENTREZ ]
RefSeq	AC_000063 [ SRS ]    AC_000063 [ ENTREZ ]
RefSeq	AC_000152 [ SRS ]    AC_000152 [ ENTREZ ]
RefSeq	NC_000020 [ SRS ]    NC_000020 [ ENTREZ ]
RefSeq	NT_011387 [ SRS ]    NT_011387 [ ENTREZ ]
RefSeq	NW_001838652 [ SRS ]    NW_001838652 [ ENTREZ ]
RefSeq	NW_927317 [ SRS ]    NW_927317 [ ENTREZ ]
AceView	PTPRA AceView - NCBI
Unigene	Hs.269577 [ SRS ]    Hs.269577 [ NCBI ]     HS269577 [ spliceNest ]
Fast-db	2667 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P18433 [ SRS]    P18433 [ EXPASY ]     P18433 [ INTERPRO ]     P18433 [ UNIPROT ]
Prosite	PS00383 TYR_PHOSPHATASE_1 [ SRS ]    PS00383 TYR_PHOSPHATASE_1 [ Expasy ]
Prosite	PS50056 TYR_PHOSPHATASE_2 [ SRS ]    PS50056 TYR_PHOSPHATASE_2 [ Expasy ]
Prosite	PS50055 TYR_PHOSPHATASE_PTP [ SRS ]    PS50055 TYR_PHOSPHATASE_PTP [ Expasy ]
Interpro	IPR000387 Tyr_Pase [ SRS ]    IPR000387 Tyr_Pase [ EBI ]
Interpro	IPR016130 Tyr_Pase_AS [ SRS ]    IPR016130 Tyr_Pase_AS [ EBI ]
Interpro	IPR000242 Tyr_Pase_rcpt/non-rcpt [ SRS ]    IPR000242 Tyr_Pase_rcpt/non-rcpt [ EBI ]
Interpro	IPR016336 Tyr_Pase_rcpt_a/e-type [ SRS ]    IPR016336 Tyr_Pase_rcpt_a/e-type [ EBI ]
CluSTr	P18433
Pfam	PF00102 Y_phosphatase [ SRS ]    PF00102 Y_phosphatase [ Sanger ]    pfam00102 [ NCBI-CDD ]
Smart	SM00194 PTPc [EMBL]
Blocks	P18433
HPRD	01476
	Protein Interaction databases
DIP	P18433
IntAct	P18433
	Polymorphism : SNP, mutations, diseases
OMIM	176884    [ map ]
GENECLINICS	176884
SNP	PTPRA [dbSNP-NCBI]
SNP	NM_002836 [SNP-NCI]
SNP	NM_080840 [SNP-NCI]
SNP	NM_080841 [SNP-NCI]
SNP	PTPRA [GeneSNPs - Utah]  PTPRA] [HGBASE - SRS]
HAPMAP	PTPRA [HAPMAP]
COSMIC	PTPRA [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	PTPRA
	General knowledge
Family Browser	PTPRA [UCSC Family Browser]
SOURCE	NM_002836
SOURCE	NM_080840
SOURCE	NM_080841
SMD	Hs.269577
SAGE	Hs.269577
Enzyme	3.1.3.48 [ Enzyme-Expasy ]   3.1.3.48 [ Enzyme-SRS ]   3.1.3.48 [ IntEnz-EBI ]   3.1.3.48 [ BRENDA ]   3.1.3.48 [ KEGG ]   3.1.3.48 [ WIT ]
GO	receptor activity [Amigo]  receptor activity
GO	transmembrane receptor protein tyrosine phosphatase activity [Amigo]  transmembrane receptor protein tyrosine phosphatase activity
GO	integral to plasma membrane [Amigo]  integral to plasma membrane
GO	protein amino acid phosphorylation [Amigo]  protein amino acid phosphorylation
GO	protein amino acid dephosphorylation [Amigo]  protein amino acid dephosphorylation
GO	membrane [Amigo]  membrane
GO	hydrolase activity [Amigo]  hydrolase activity
BIOCARTA	Activation of Src by Protein-tyrosine phosphatase alpha    [Genes]
PubGene	PTPRA
TreeFam	PTPRA
CTD	5786 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	PTPRA Related clones (RZPD - Berlin)
	PubMed
PubMed	57 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Sep 29 18:17:21 2008