RNF39 (ring finger protein 39)

Identity

Other names	HZF
	HZFW
	LIRF
HGNC	RNF39
Location	6p21.3
Location_base_pair	Starts at 30146022 and ends at 30151607 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	RNF39   18064
Entrez_Gene	RNF39  80352  ring finger protein 39
	Cards
GeneCards	RNF39
Ensembl	RNF39 [Search_View]   ENSG00000204618 [Gene_View]
Genatlas	RNF39
GeneLynx	RNF39
eGenome	RNF39
euGene	80352
	Genomic and cartography
GoldenPath	RNF39  -  6p21.3   chr6:30146022-30151607 -  6p21.33   [Description]    (hg18-March_2006)
Ensembl	RNF39 - 6p21.33 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	RNF39
	Gene and transcription
Genbank	AF238315 [ ENTREZ ]
Genbank	AF238316 [ ENTREZ ]
Genbank	AF238317 [ ENTREZ ]
Genbank	BC111601 [ ENTREZ ]
Genbank	CA311242 [ ENTREZ ]
RefSeq	NM_025236 [ SRS ]    NM_025236 [ ENTREZ ]
RefSeq	NM_170769 [ SRS ]    NM_170769 [ ENTREZ ]
RefSeq	AC_000049 [ SRS ]    AC_000049 [ ENTREZ ]
RefSeq	AC_000138 [ SRS ]    AC_000138 [ ENTREZ ]
RefSeq	NC_000006 [ SRS ]    NC_000006 [ ENTREZ ]
RefSeq	NT_007592 [ SRS ]    NT_007592 [ ENTREZ ]
RefSeq	NT_113891 [ SRS ]    NT_113891 [ ENTREZ ]
RefSeq	NT_113893 [ SRS ]    NT_113893 [ ENTREZ ]
RefSeq	NW_001838980 [ SRS ]    NW_001838980 [ ENTREZ ]
RefSeq	NW_923073 [ SRS ]    NW_923073 [ ENTREZ ]
AceView	RNF39 AceView - NCBI
Unigene	Hs.121178 [ SRS ]    Hs.121178 [ NCBI ]     HS121178 [ spliceNest ]
Fast-db	5354 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q2L6J4 [ SRS]    Q2L6J4 [ EXPASY ]     Q2L6J4 [ INTERPRO ]     Q2L6J4 [ UNIPROT ]
Prosite	PS50188 B302_SPRY [ SRS ]    PS50188 B302_SPRY [ Expasy ]
Prosite	PS00518 ZF_RING_1 [ SRS ]    PS00518 ZF_RING_1 [ Expasy ]
Prosite	PS50089 ZF_RING_2 [ SRS ]    PS50089 ZF_RING_2 [ Expasy ]
Interpro	IPR001870 B302 [ SRS ]    IPR001870 B302 [ EBI ]
Interpro	IPR003879 Butyrophylin [ SRS ]    IPR003879 Butyrophylin [ EBI ]
Interpro	IPR006574 PRY [ SRS ]    IPR006574 PRY [ EBI ]
Interpro	IPR003877 SPRY_rcpt [ SRS ]    IPR003877 SPRY_rcpt [ EBI ]
Interpro	IPR001841 Znf_RING [ SRS ]    IPR001841 Znf_RING [ EBI ]
Interpro	IPR013083 Znf_RING/FYVE/PHD [ SRS ]    IPR013083 Znf_RING/FYVE/PHD [ EBI ]
CluSTr	Q2L6J4
Pfam	PF00622 SPRY [ SRS ]    PF00622 SPRY [ Sanger ]    pfam00622 [ NCBI-CDD ]
Pfam	PF00097 zf-C3HC4 [ SRS ]    PF00097 zf-C3HC4 [ Sanger ]    pfam00097 [ NCBI-CDD ]
Smart	SM00589 PRY [EMBL]
Smart	SM00184 RING [EMBL]
Blocks	Q2L6J4
HPRD	09600
	Protein Interaction databases
DIP	Q2L6J4
IntAct	Q2L6J4
	Polymorphism : SNP, mutations, diseases
OMIM	607524    [ map ]
GENECLINICS	607524
SNP	RNF39 [dbSNP-NCBI]
SNP	NM_025236 [SNP-NCI]
SNP	NM_170769 [SNP-NCI]
SNP	RNF39 [GeneSNPs - Utah]  RNF39] [HGBASE - SRS]
HAPMAP	RNF39 [HAPMAP]
COSMIC	RNF39 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	RNF39
	General knowledge
Family Browser	RNF39 [UCSC Family Browser]
SOURCE	NM_025236
SOURCE	NM_170769
SMD	Hs.121178
SAGE	Hs.121178
GO	protein binding [Amigo]  protein binding
GO	cellular_component [Amigo]  cellular_component
GO	cytoplasm [Amigo]  cytoplasm
GO	biological_process [Amigo]  biological_process
GO	zinc ion binding [Amigo]  zinc ion binding
GO	metal ion binding [Amigo]  metal ion binding
PubGene	RNF39
TreeFam	RNF39
CTD	80352 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	RNF39 Related clones (RZPD - Berlin)
	PubMed
PubMed	8 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Tue Oct 14 20:52:47 2008