RPN1 (ribophorin I)

Identity

Other names	DKFZp686B16177
	OST1
	RBPH1
HGNC	RPN1
Location	3q21.3
Location_base_pair	Starts at 129821503 and ends at 129852409 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

Breakpoints

External links

	Nomenclature
HGNC	RPN1   10381
Entrez_Gene	RPN1  6184  ribophorin I
	Cards
GeneCards	RPN1
Ensembl	ENSG00000163902 [Gene_View]  RPN1 [Vega]
Genatlas	RPN1
	Genomic and cartography
GoldenPath	RPN1  -  3q21.3   chr3:129821503-129852409 -  3q21.3   [Description]    (hg18-March_2006)
Ensembl	RPN1 - 3q21.3 [CytoView]
NCBI	Mapview
OMIM	180470 Disease map [OMIM]
HomoloGene	RPN1
	Gene and transcription
Genbank	AK223595 [ ENTREZ ]
Genbank	AK296905 [ ENTREZ ]
Genbank	AK297941 [ ENTREZ ]
Genbank	AK312369 [ ENTREZ ]
Genbank	BC007995 [ ENTREZ ]
RefSeq	NM_002950 [ SRS ]    NM_002950 [ ENTREZ ]
RefSeq	AC_000046 [ SRS ]    AC_000046 [ ENTREZ ]
RefSeq	AC_000135 [ SRS ]    AC_000135 [ ENTREZ ]
RefSeq	NC_000003 [ SRS ]    NC_000003 [ ENTREZ ]
RefSeq	NT_005612 [ SRS ]    NT_005612 [ ENTREZ ]
RefSeq	NW_001838883 [ SRS ]    NW_001838883 [ ENTREZ ]
RefSeq	NW_921807 [ SRS ]    NW_921807 [ ENTREZ ]
CCDS	RPN1 CCDS - NCBI
AceView	RPN1 AceView - NCBI
Unigene	Hs.603636 [ SRS ]    Hs.603636 [ NCBI ]
Fast-db	12596 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P04843 [ SRS]    P04843 [ EXPASY ]     P04843 [ INTERPRO ]     P04843 [ UNIPROT ] P04843 [ VarSplice FASTA ]
Interpro	IPR007676 Ribophorin_I [ SRS ]    IPR007676 Ribophorin_I [ EBI ]
CluSTr	P04843
Pfam	PF04597 Ribophorin_I [ SRS ]    PF04597 Ribophorin_I [ Sanger ]    pfam04597 [ NCBI-CDD ]
Blocks	P04843
HPRD	01598
	Protein Interaction databases
DIP	P04843
IntAct	P04843
	Polymorphism : SNP, mutations, diseases
OMIM	180470    [ map ]
GENETests	180470
SNP	RPN1 [dbSNP-NCBI]
SNP	NM_002950 [SNP-NCI]
SNP	RPN1 [GeneSNPs - Utah]  RPN1] [HGBASE - SRS]
HAPMAP	RPN1 [HAPMAP]
COSMIC	RPN1 [Somatic mutation (COSMIC-CGP-Sanger)]
TICdb	dolichyl-diphosphooligosaccharide-protein [Translocation breakpoints In Cancer]
HGMD	RPN1
Genetic Association	RPN1
CDC HuGE	RPN1
	General knowledge
Family Browser	RPN1 [UCSC Family Browser]
SOURCE	NM_002950
SMD	Hs.603636
SAGE	Hs.603636
Enzyme	2.4.1.119 [ Enzyme-Expasy ]   2.4.1.119 [ Enzyme-SRS ]   2.4.1.119 [ IntEnz-EBI ]   2.4.1.119 [ BRENDA ]   2.4.1.119 [ KEGG ]
GO	dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Amigo]  dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO	protein binding [Amigo]  protein binding
GO	endoplasmic reticulum [Amigo]  endoplasmic reticulum
GO	protein amino acid glycosylation [Amigo]  protein amino acid glycosylation
GO	oligosaccharyl transferase complex [Amigo]  oligosaccharyl transferase complex
GO	membrane [Amigo]  membrane
GO	integral to membrane [Amigo]  integral to membrane
GO	transferase activity [Amigo]  transferase activity
GO	protein amino acid N-linked glycosylation via asparagine [Amigo]  protein amino acid N-linked glycosylation via asparagine
GO	rough endoplasmic reticulum membrane [Amigo]  rough endoplasmic reticulum membrane
GO	melanosome [Amigo]  melanosome
KEGG	N-Glycan biosynthesis
KEGG	Glycan structures - biosynthesis 1
PubGene	RPN1
TreeFam	RPN1
CTD	6184 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	RPN1 Related clones (RZPD - Berlin)
	PubMed
PubMed	18 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Dec 6 17:06:58 2008