SAFB (scaffold attachment factor B)

Identity

Other names	DKFZp779C1727
	HAP
	HET
	SAFB1
HGNC	SAFB
Location	19p13.3-p13.2
Location_base_pair	Starts at 5574164 and ends at 5619489 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	SAFB   10520
Entrez_Gene	SAFB  6294  scaffold attachment factor B
	Cards
GeneCards	SAFB
Ensembl	ENSG00000160633 [Gene_View]  SAFB [Vega]
Genatlas	SAFB
	Genomic and cartography
GoldenPath	SAFB  -     chr19:5574164-5619489 +  19p13.3   [Description]    (hg18-March_2006)
Ensembl	SAFB - 19p13.3 [CytoView]
NCBI	Mapview
OMIM	602895 Disease map [OMIM]
HomoloGene	SAFB
	Gene and transcription
Genbank	AB208780 [ ENTREZ ]
Genbank	AK095736 [ ENTREZ ]
Genbank	AK290444 [ ENTREZ ]
Genbank	AK307970 [ ENTREZ ]
Genbank	BC020309 [ ENTREZ ]
RefSeq	NM_002967 [ SRS ]    NM_002967 [ ENTREZ ]
RefSeq	AC_000062 [ SRS ]    AC_000062 [ ENTREZ ]
RefSeq	AC_000151 [ SRS ]    AC_000151 [ ENTREZ ]
RefSeq	NC_000019 [ SRS ]    NC_000019 [ ENTREZ ]
RefSeq	NT_011255 [ SRS ]    NT_011255 [ ENTREZ ]
RefSeq	NW_001838477 [ SRS ]    NW_001838477 [ ENTREZ ]
RefSeq	NW_927173 [ SRS ]    NW_927173 [ ENTREZ ]
CCDS	SAFB CCDS - NCBI
AceView	SAFB AceView - NCBI
Unigene	Hs.23978 [ SRS ]    Hs.23978 [ NCBI ]
Fast-db	3227 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q15424 [ SRS]    Q15424 [ EXPASY ]     Q15424 [ INTERPRO ]     Q15424 [ UNIPROT ] Q15424 [ VarSplice FASTA ]
Prosite	PS50102 RRM [ SRS ]    PS50102 RRM [ Expasy ]
Prosite	PS50800 SAP [ SRS ]    PS50800 SAP [ Expasy ]
Interpro	IPR012677 a_b_plait_nuc_bd [ SRS ]    IPR012677 a_b_plait_nuc_bd [ EBI ]
Interpro	IPR000504 RRM_RNP1 [ SRS ]    IPR000504 RRM_RNP1 [ EBI ]
Interpro	IPR003034 SAP_DNA_bd [ SRS ]    IPR003034 SAP_DNA_bd [ EBI ]
CluSTr	Q15424
Pfam	PF00076 RRM_1 [ SRS ]    PF00076 RRM_1 [ Sanger ]    pfam00076 [ NCBI-CDD ]
Pfam	PF02037 SAP [ SRS ]    PF02037 SAP [ Sanger ]    pfam02037 [ NCBI-CDD ]
Smart	SM00360 RRM [EMBL]
Smart	SM00513 SAP [EMBL]
Blocks	Q15424
HPRD	04205
	Protein Interaction databases
DIP	Q15424
IntAct	Q15424
	Polymorphism : SNP, mutations, diseases
OMIM	602895    [ map ]
GENETests	602895
SNP	SAFB [dbSNP-NCBI]
SNP	NM_002967 [SNP-NCI]
SNP	SAFB [GeneSNPs - Utah]  SAFB] [HGBASE - SRS]
HAPMAP	SAFB [HAPMAP]
COSMIC	SAFB [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	SAFB
Genetic Association	SAFB
CDC HuGE	SAFB
	General knowledge
Family Browser	SAFB [UCSC Family Browser]
SOURCE	NM_002967
SMD	Hs.23978
SAGE	Hs.23978
GO	nucleotide binding [Amigo]  nucleotide binding
GO	nucleic acid binding [Amigo]  nucleic acid binding
GO	DNA binding [Amigo]  DNA binding
GO	double-stranded DNA binding [Amigo]  double-stranded DNA binding
GO	RNA binding [Amigo]  RNA binding
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	establishment and/or maintenance of chromatin architecture [Amigo]  establishment and/or maintenance of chromatin architecture
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
PubGene	SAFB
TreeFam	SAFB
CTD	6294 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	SAFB Related clones (RZPD - Berlin)
	PubMed
PubMed	34 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Dec 6 17:07:24 2008