SATB1 (SATB homeobox 1)

Identity

Other names	-
HGNC	SATB1
Location	3p24.3
Location_base_pair	Starts at 18364438 and ends at 18440344 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	SATB1   10541
Entrez_Gene	SATB1  6304  SATB homeobox 1
	Cards
GeneCards	SATB1
Ensembl	ENSG00000182568 [Gene_View]  SATB1 [Vega]
Genatlas	SATB1
	Genomic and cartography
GoldenPath	SATB1  -  3p24.3   chr3:18364438-18440344 -  3p24.3   [Description]    (hg18-March_2006)
Ensembl	SATB1 - 3p24.3 [CytoView]
NCBI	Mapview
OMIM	602075 Disease map [OMIM]
HomoloGene	SATB1
	Gene and transcription
Genbank	AB209761 [ ENTREZ ]
Genbank	AK127242 [ ENTREZ ]
Genbank	AU127749 [ ENTREZ ]
Genbank	BC001744 [ ENTREZ ]
Genbank	BE218845 [ ENTREZ ]
RefSeq	NM_002971 [ SRS ]    NM_002971 [ ENTREZ ]
RefSeq	AC_000046 [ SRS ]    AC_000046 [ ENTREZ ]
RefSeq	AC_000135 [ SRS ]    AC_000135 [ ENTREZ ]
RefSeq	NC_000003 [ SRS ]    NC_000003 [ ENTREZ ]
RefSeq	NT_022517 [ SRS ]    NT_022517 [ ENTREZ ]
RefSeq	NW_001838877 [ SRS ]    NW_001838877 [ ENTREZ ]
RefSeq	NW_921651 [ SRS ]    NW_921651 [ ENTREZ ]
CCDS	SATB1 CCDS - NCBI
AceView	SATB1 AceView - NCBI
Unigene	Hs.517717 [ SRS ]    Hs.517717 [ NCBI ]
Fast-db	2898 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q01826 [ SRS]    Q01826 [ EXPASY ]     Q01826 [ INTERPRO ]     Q01826 [ UNIPROT ] Q01826 [ VarSplice FASTA ]
Prosite	PS51042 CUT [ SRS ]    PS51042 CUT [ Expasy ]
Prosite	PS00027 HOMEOBOX_1 [ SRS ]    PS00027 HOMEOBOX_1 [ Expasy ]
Prosite	PS50071 HOMEOBOX_2 [ SRS ]    PS50071 HOMEOBOX_2 [ Expasy ]
Interpro	IPR003350 Hmoeo_CUT [ SRS ]    IPR003350 Hmoeo_CUT [ EBI ]
Interpro	IPR001356 Homeobox [ SRS ]    IPR001356 Homeobox [ EBI ]
CluSTr	Q01826
Pfam	PF02376 CUT [ SRS ]    PF02376 CUT [ Sanger ]    pfam02376 [ NCBI-CDD ]
Pfam	PF00046 Homeobox [ SRS ]    PF00046 Homeobox [ Sanger ]    pfam00046 [ NCBI-CDD ]
Smart	SM00389 HOX [EMBL]
Blocks	Q01826
PDB	1YSE [ SRS ]    1YSE [ PdbSum ],   1YSE [ IMB ]   1YSE [ RSDB ]
PDB	2O49 [ SRS ]    2O49 [ PdbSum ],   2O49 [ IMB ]   2O49 [ RSDB ]
PDB	2O4A [ SRS ]    2O4A [ PdbSum ],   2O4A [ IMB ]   2O4A [ RSDB ]
HPRD	03647
	Protein Interaction databases
DIP	Q01826
IntAct	Q01826
	Polymorphism : SNP, mutations, diseases
OMIM	602075    [ map ]
GENETests	602075
SNP	SATB1 [dbSNP-NCBI]
SNP	NM_002971 [SNP-NCI]
SNP	SATB1 [GeneSNPs - Utah]  SATB1] [HGBASE - SRS]
HAPMAP	SATB1 [HAPMAP]
COSMIC	SATB1 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	SATB1
Genetic Association	SATB1
CDC HuGE	SATB1
	General knowledge
Family Browser	SATB1 [UCSC Family Browser]
SOURCE	NM_002971
SMD	Hs.517717
SAGE	Hs.517717
GO	negative regulation of transcription from RNA polymerase II promoter [Amigo]  negative regulation of transcription from RNA polymerase II promoter
GO	double-stranded DNA binding [Amigo]  double-stranded DNA binding
GO	transcription factor activity [Amigo]  transcription factor activity
GO	nucleus [Amigo]  nucleus
GO	nucleus [Amigo]  nucleus
GO	nuclear heterochromatin [Amigo]  nuclear heterochromatin
GO	establishment and/or maintenance of chromatin architecture [Amigo]  establishment and/or maintenance of chromatin architecture
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	histone methylation [Amigo]  histone methylation
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
PubGene	SATB1
TreeFam	SATB1
CTD	6304 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	SATB1 Related clones (RZPD - Berlin)
	PubMed
PubMed	29 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

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Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Dec 6 17:07:30 2008