SCGN (secretagogin, EF-hand calcium binding protein)

Identity

Other names	CALBL
	DJ501N12.8
	SECRET
	SEGN
	setagin
HGNC	SCGN
Location	6p22.3-p22.1
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	SCGN   16941
Entrez_Gene	SCGN  10590  secretagogin, EF-hand calcium binding protein
	Cards
GeneCards	SCGN
Ensembl	SCGN [Search_View]   ENSG00000079689 [Gene_View]
Genatlas	SCGN
GeneLynx	SCGN
eGenome	SCGN
euGene	10590
	Genomic and cartography
GoldenPath	SCGN  -     chr6:25760408-25809987 +  6p22.2   [Description]    (hg18-March_2006)
Ensembl	SCGN - 6p22.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	SCGN
	Gene and transcription
Genbank	AF420280 [ ENTREZ ]
Genbank	AK094387 [ ENTREZ ]
Genbank	AK289477 [ ENTREZ ]
Genbank	BC000336 [ ENTREZ ]
Genbank	BC003036 [ ENTREZ ]
RefSeq	NM_006998 [ SRS ]    NM_006998 [ ENTREZ ]
RefSeq	AC_000049 [ SRS ]    AC_000049 [ ENTREZ ]
RefSeq	AC_000138 [ SRS ]    AC_000138 [ ENTREZ ]
RefSeq	NC_000006 [ SRS ]    NC_000006 [ ENTREZ ]
RefSeq	NT_007592 [ SRS ]    NT_007592 [ ENTREZ ]
RefSeq	NW_001838974 [ SRS ]    NW_001838974 [ ENTREZ ]
RefSeq	NW_922984 [ SRS ]    NW_922984 [ ENTREZ ]
AceView	SCGN AceView - NCBI
Unigene	Hs.116428 [ SRS ]    Hs.116428 [ NCBI ]     HS116428 [ spliceNest ]
Fast-db	3969 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	O76038 [ SRS]    O76038 [ EXPASY ]     O76038 [ INTERPRO ]     O76038 [ UNIPROT ]
Prosite	PS00018 EF_HAND_1 [ SRS ]    PS00018 EF_HAND_1 [ Expasy ]
Prosite	PS50222 EF_HAND_2 [ SRS ]    PS50222 EF_HAND_2 [ Expasy ]
Interpro	IPR011992 EF-Hand_type [ SRS ]    IPR011992 EF-Hand_type [ EBI ]
Interpro	IPR002048 EF_hand_Ca_bd [ SRS ]    IPR002048 EF_hand_Ca_bd [ EBI ]
CluSTr	O76038
Pfam	PF00036 efhand [ SRS ]    PF00036 efhand [ Sanger ]    pfam00036 [ NCBI-CDD ]
Smart	SM00054 EFh [EMBL]
Prodom	PD000012 EF-hand[INRA-Toulouse]
Prodom	O76038 SEGN_HUMAN [ Domain structure ]   O76038 SEGN_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	O76038
HPRD	10211
	Protein Interaction databases
DIP	O76038
IntAct	O76038
	Polymorphism : SNP, mutations, diseases
OMIM	609202    [ map ]
GENECLINICS	609202
SNP	SCGN [dbSNP-NCBI]
SNP	NM_006998 [SNP-NCI]
SNP	SCGN [GeneSNPs - Utah]  SCGN] [HGBASE - SRS]
HAPMAP	SCGN [HAPMAP]
HGMD	SCGN
	General knowledge
Family Browser	SCGN [UCSC Family Browser]
SOURCE	NM_006998
SMD	Hs.116428
SAGE	Hs.116428
GO	calcium ion binding [Amigo]  calcium ion binding
GO	extracellular region [Amigo]  extracellular region
GO	cytoplasm [Amigo]  cytoplasm
GO	biological_process [Amigo]  biological_process
GO	membrane [Amigo]  membrane
GO	cytoplasmic vesicle [Amigo]  cytoplasmic vesicle
PubGene	SCGN
TreeFam	SCGN
CTD	10590 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	SCGN Related clones (RZPD - Berlin)
	PubMed
PubMed	10 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:30:57 2008