SEMA5A (sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A)

Identity

Other names	FLJ12815
	SEMAF
	semF
HGNC	SEMA5A
Location	5p15.2
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	SEMA5A   10736
Entrez_Gene	SEMA5A  9037  sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
	Cards
GeneCards	SEMA5A
Ensembl	SEMA5A [Search_View]   ENSG00000112902 [Gene_View]
Genatlas	SEMA5A
GeneLynx	SEMA5A
eGenome	SEMA5A
euGene	9037
	Genomic and cartography
GoldenPath	SEMA5A  -  5p15.2   chr5:9088138-9599233 -  5p15.2   [Description]    (hg18-March_2006)
Ensembl	SEMA5A - 5p15.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	SEMA5A
	Gene and transcription
Genbank	AF009314 [ ENTREZ ]
Genbank	AF056434 [ ENTREZ ]
Genbank	AK022877 [ ENTREZ ]
Genbank	AK307587 [ ENTREZ ]
Genbank	BC115696 [ ENTREZ ]
RefSeq	NM_003966 [ SRS ]    NM_003966 [ ENTREZ ]
RefSeq	AC_000048 [ SRS ]    AC_000048 [ ENTREZ ]
RefSeq	AC_000137 [ SRS ]    AC_000137 [ ENTREZ ]
RefSeq	NC_000005 [ SRS ]    NC_000005 [ ENTREZ ]
RefSeq	NT_006576 [ SRS ]    NT_006576 [ ENTREZ ]
RefSeq	NW_001838927 [ SRS ]    NW_001838927 [ ENTREZ ]
RefSeq	NW_922518 [ SRS ]    NW_922518 [ ENTREZ ]
AceView	SEMA5A AceView - NCBI
Unigene	Hs.27621 [ SRS ]    Hs.27621 [ NCBI ]     HS27621 [ spliceNest ]
Fast-db	1369 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q13591 [ SRS]    Q13591 [ EXPASY ]     Q13591 [ INTERPRO ]     Q13591 [ UNIPROT ]
Prosite	PS51004 SEMA [ SRS ]    PS51004 SEMA [ Expasy ]
Prosite	PS50092 TSP1 [ SRS ]    PS50092 TSP1 [ Expasy ]
Interpro	IPR003659 Plexin-like [ SRS ]    IPR003659 Plexin-like [ EBI ]
Interpro	IPR002165 Plexin_repeat [ SRS ]    IPR002165 Plexin_repeat [ EBI ]
Interpro	IPR001627 Sema [ SRS ]    IPR001627 Sema [ EBI ]
Interpro	IPR000884 TSP1 [ SRS ]    IPR000884 TSP1 [ EBI ]
Interpro	IPR008085 TSP_1 [ SRS ]    IPR008085 TSP_1 [ EBI ]
Interpro	IPR015943 WD40/YVTN_repeat-like [ SRS ]    IPR015943 WD40/YVTN_repeat-like [ EBI ]
CluSTr	Q13591
Pfam	PF01437 PSI [ SRS ]    PF01437 PSI [ Sanger ]    pfam01437 [ NCBI-CDD ]
Pfam	PF01403 Sema [ SRS ]    PF01403 Sema [ Sanger ]    pfam01403 [ NCBI-CDD ]
Pfam	PF00090 TSP_1 [ SRS ]    PF00090 TSP_1 [ Sanger ]    pfam00090 [ NCBI-CDD ]
Smart	SM00423 PSI [EMBL]
Smart	SM00630 Sema [EMBL]
Smart	SM00209 TSP1 [EMBL]
Blocks	Q13591
HPRD	10219
	Protein Interaction databases
DIP	Q13591
IntAct	Q13591
	Polymorphism : SNP, mutations, diseases
OMIM	609297    [ map ]
GENECLINICS	609297
SNP	SEMA5A [dbSNP-NCBI]
SNP	NM_003966 [SNP-NCI]
SNP	SEMA5A [GeneSNPs - Utah]  SEMA5A] [HGBASE - SRS]
HAPMAP	SEMA5A [HAPMAP]
HGMD	SEMA5A
	General knowledge
Family Browser	SEMA5A [UCSC Family Browser]
SOURCE	NM_003966
SMD	Hs.27621
SAGE	Hs.27621
GO	receptor activity [Amigo]  receptor activity
GO	cell adhesion [Amigo]  cell adhesion
GO	cell-cell signaling [Amigo]  cell-cell signaling
GO	multicellular organismal development [Amigo]  multicellular organismal development
GO	nervous system development [Amigo]  nervous system development
GO	membrane [Amigo]  membrane
GO	integral to membrane [Amigo]  integral to membrane
GO	cell differentiation [Amigo]  cell differentiation
KEGG	Axon guidance
PubGene	SEMA5A
TreeFam	SEMA5A
CTD	9037 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	SEMA5A Related clones (RZPD - Berlin)
	PubMed
PubMed	15 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:31:15 2008