SEPHS1 (selenophosphate synthetase 1)

Identity

Other names	MGC4980
	SELD
	SPS
	SPS1
HGNC	SEPHS1
Location	10p14
Location_base_pair	Starts at 13400087 and ends at 13430286 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	SEPHS1   19685
Entrez_Gene	SEPHS1  22929  selenophosphate synthetase 1
	Cards
GeneCards	SEPHS1
Ensembl	ENSG00000086475 [Gene_View]  SEPHS1 [Vega]
Genatlas	SEPHS1
	Genomic and cartography
GoldenPath	SEPHS1  -  10p14   chr10:13400087-13430286 -  10p13   [Description]    (hg18-March_2006)
Ensembl	SEPHS1 - 10p13 [CytoView]
NCBI	Mapview
OMIM	600902 Disease map [OMIM]
HomoloGene	SEPHS1
	Gene and transcription
Genbank	AK125066 [ ENTREZ ]
Genbank	AK309829 [ ENTREZ ]
Genbank	AL557595 [ ENTREZ ]
Genbank	AL579174 [ ENTREZ ]
Genbank	BC000941 [ ENTREZ ]
RefSeq	NM_012247 [ SRS ]    NM_012247 [ ENTREZ ]
RefSeq	AC_000053 [ SRS ]    AC_000053 [ ENTREZ ]
RefSeq	AC_000142 [ SRS ]    AC_000142 [ ENTREZ ]
RefSeq	NC_000010 [ SRS ]    NC_000010 [ ENTREZ ]
RefSeq	NT_077569 [ SRS ]    NT_077569 [ ENTREZ ]
RefSeq	NW_001837931 [ SRS ]    NW_001837931 [ ENTREZ ]
RefSeq	NW_924584 [ SRS ]    NW_924584 [ ENTREZ ]
CCDS	SEPHS1 CCDS - NCBI
AceView	SEPHS1 AceView - NCBI
Unigene	Hs.124027 [ SRS ]    Hs.124027 [ NCBI ]
Fast-db	3161 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P49903 [ SRS]    P49903 [ EXPASY ]     P49903 [ INTERPRO ]     P49903 [ UNIPROT ] P49903 [ VarSplice FASTA ]
Interpro	IPR000728 AIR_synth [ SRS ]    IPR000728 AIR_synth [ EBI ]
Interpro	IPR010918 AIR_synth_C [ SRS ]    IPR010918 AIR_synth_C [ EBI ]
Interpro	IPR004536 SelD [ SRS ]    IPR004536 SelD [ EBI ]
CluSTr	P49903
Pfam	PF00586 AIRS [ SRS ]    PF00586 AIRS [ Sanger ]    pfam00586 [ NCBI-CDD ]
Pfam	PF02769 AIRS_C [ SRS ]    PF02769 AIRS_C [ Sanger ]    pfam02769 [ NCBI-CDD ]
Blocks	P49903
HPRD	02944
	Protein Interaction databases
DIP	P49903
IntAct	P49903
	Polymorphism : SNP, mutations, diseases
OMIM	600902    [ map ]
GENETests	600902
SNP	SEPHS1 [dbSNP-NCBI]
SNP	NM_012247 [SNP-NCI]
SNP	SEPHS1 [GeneSNPs - Utah]  SEPHS1] [HGBASE - SRS]
HAPMAP	SEPHS1 [HAPMAP]
HGMD	SEPHS1
Genetic Association	SEPHS1
CDC HuGE	SEPHS1
	General knowledge
Family Browser	SEPHS1 [UCSC Family Browser]
SOURCE	NM_012247
SMD	Hs.124027
SAGE	Hs.124027
Enzyme	2.7.9.3 [ Enzyme-Expasy ]   2.7.9.3 [ Enzyme-SRS ]   2.7.9.3 [ IntEnz-EBI ]   2.7.9.3 [ BRENDA ]   2.7.9.3 [ KEGG ]
GO	nucleotide binding [Amigo]  nucleotide binding
GO	catalytic activity [Amigo]  catalytic activity
GO	selenide, water dikinase activity [Amigo]  selenide, water dikinase activity
GO	ATP binding [Amigo]  ATP binding
GO	ATP binding [Amigo]  ATP binding
GO	GTP binding [Amigo]  GTP binding
GO	protein modification process [Amigo]  protein modification process
GO	selenium binding [Amigo]  selenium binding
GO	transferase activity [Amigo]  transferase activity
KEGG	Selenoamino acid metabolism
PubGene	SEPHS1
TreeFam	SEPHS1
CTD	22929 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	SEPHS1 Related clones (RZPD - Berlin)
	PubMed
PubMed	8 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Dec 6 17:07:55 2008