SETMAR (SET domain and mariner transposase fusion gene)

Identity

Other names	METNASE
HGNC	SETMAR
Location	3p26.2
Location_base_pair	Starts at 4319988 and ends at 4333949 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	SETMAR   10762
Entrez_Gene	SETMAR  6419  SET domain and mariner transposase fusion gene
	Cards
GeneCards	SETMAR
Ensembl	ENSG00000170364 [Gene_View]  SETMAR [Vega]
Genatlas	SETMAR
	Genomic and cartography
GoldenPath	SETMAR  -  3p26.2   chr3:4319988-4333949 +  3p26.2   [Description]    (hg18-March_2006)
Ensembl	SETMAR - 3p26.2 [CytoView]
NCBI	Mapview
OMIM	609834 Disease map [OMIM]
HomoloGene	SETMAR
	Gene and transcription
Genbank	AF054989 [ ENTREZ ]
Genbank	AK222734 [ ENTREZ ]
Genbank	AK307537 [ ENTREZ ]
Genbank	AK311418 [ ENTREZ ]
Genbank	AY952295 [ ENTREZ ]
RefSeq	NM_006515 [ SRS ]    NM_006515 [ ENTREZ ]
RefSeq	AC_000046 [ SRS ]    AC_000046 [ ENTREZ ]
RefSeq	AC_000135 [ SRS ]    AC_000135 [ ENTREZ ]
RefSeq	NC_000003 [ SRS ]    NC_000003 [ ENTREZ ]
RefSeq	NT_022517 [ SRS ]    NT_022517 [ ENTREZ ]
RefSeq	NW_001838876 [ SRS ]    NW_001838876 [ ENTREZ ]
RefSeq	NW_921651 [ SRS ]    NW_921651 [ ENTREZ ]
CCDS	SETMAR CCDS - NCBI
AceView	SETMAR AceView - NCBI
Unigene	Hs.475300 [ SRS ]    Hs.475300 [ NCBI ]
Fast-db	857 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q53H47 [ SRS]    Q53H47 [ EXPASY ]     Q53H47 [ INTERPRO ]     Q53H47 [ UNIPROT ] Q53H47 [ VarSplice FASTA ]
Prosite	PS50868 POST_SET [ SRS ]    PS50868 POST_SET [ Expasy ]
Prosite	PS50867 PRE_SET [ SRS ]    PS50867 PRE_SET [ Expasy ]
Prosite	PS50280 SET [ SRS ]    PS50280 SET [ Expasy ]
Interpro	IPR003616 Post-SET_Zn_bd [ SRS ]    IPR003616 Post-SET_Zn_bd [ EBI ]
Interpro	IPR007728 Pre-SET_Zn_bd [ SRS ]    IPR007728 Pre-SET_Zn_bd [ EBI ]
Interpro	IPR003606 Pre-SET_Zn_bd_sub [ SRS ]    IPR003606 Pre-SET_Zn_bd_sub [ EBI ]
Interpro	IPR001214 SET [ SRS ]    IPR001214 SET [ EBI ]
Interpro	IPR001888 Transposase_1 [ SRS ]    IPR001888 Transposase_1 [ EBI ]
CluSTr	Q53H47
Pfam	PF05033 Pre-SET [ SRS ]    PF05033 Pre-SET [ Sanger ]    pfam05033 [ NCBI-CDD ]
Pfam	PF00856 SET [ SRS ]    PF00856 SET [ Sanger ]    pfam00856 [ NCBI-CDD ]
Pfam	PF01359 Transposase_1 [ SRS ]    PF01359 Transposase_1 [ Sanger ]    pfam01359 [ NCBI-CDD ]
Smart	SM00508 PostSET [EMBL]
Smart	SM00468 PreSET [EMBL]
Smart	SM00317 SET [EMBL]
Blocks	Q53H47
HPRD	10225
	Protein Interaction databases
DIP	Q53H47
IntAct	Q53H47
	Polymorphism : SNP, mutations, diseases
OMIM	609834    [ map ]
GENETests	609834
SNP	SETMAR [dbSNP-NCBI]
SNP	NM_006515 [SNP-NCI]
SNP	SETMAR [GeneSNPs - Utah]  SETMAR] [HGBASE - SRS]
HAPMAP	SETMAR [HAPMAP]
HGMD	SETMAR
Genetic Association	SETMAR
CDC HuGE	SETMAR
	General knowledge
Family Browser	SETMAR [UCSC Family Browser]
SOURCE	NM_006515
SMD	Hs.475300
SAGE	Hs.475300
Enzyme	2.1.1.43 [ Enzyme-Expasy ]   2.1.1.43 [ Enzyme-SRS ]   2.1.1.43 [ IntEnz-EBI ]   2.1.1.43 [ BRENDA ]   2.1.1.43 [ KEGG ]
GO	DNA binding [Amigo]  DNA binding
GO	transposase activity [Amigo]  transposase activity
GO	cellular_component [Amigo]  cellular_component
GO	nucleus [Amigo]  nucleus
GO	DNA repair [Amigo]  DNA repair
GO	transposition, DNA-mediated [Amigo]  transposition, DNA-mediated
GO	methyltransferase activity [Amigo]  methyltransferase activity
GO	zinc ion binding [Amigo]  zinc ion binding
GO	chromatin modification [Amigo]  chromatin modification
GO	transferase activity [Amigo]  transferase activity
GO	histone-lysine N-methyltransferase activity [Amigo]  histone-lysine N-methyltransferase activity
PubGene	SETMAR
TreeFam	SETMAR
CTD	6419 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	SETMAR Related clones (RZPD - Berlin)
	PubMed
PubMed	16 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Dec 6 17:08:09 2008