SOX11 (SRY (sex determining region Y)-box 11)

Identity

Other names	-
HGNC	SOX11
Location	2p25
Location_base_pair	Starts at 5750250 and ends at 5758968 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	SOX11   11191
Entrez_Gene	SOX11  6664  SRY (sex determining region Y)-box 11
	Cards
GeneCards	SOX11
Ensembl	SOX11 [Search_View]   ENSG00000176887 [Gene_View]
Genatlas	SOX11
GeneLynx	SOX11
eGenome	SOX11
euGene	6664
	Genomic and cartography
GoldenPath	SOX11  -  2p25   chr2:5750250-5758968 +  2p25.2   [Description]    (hg18-March_2006)
Ensembl	SOX11 - 2p25.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	SOX11
	Gene and transcription
Genbank	AB028641 [ ENTREZ ]
Genbank	BC025789 [ ENTREZ ]
Genbank	BC160119 [ ENTREZ ]
Genbank	CR622054 [ ENTREZ ]
Genbank	U23752 [ ENTREZ ]
RefSeq	NM_003108 [ SRS ]    NM_003108 [ ENTREZ ]
RefSeq	AC_000045 [ SRS ]    AC_000045 [ ENTREZ ]
RefSeq	AC_000134 [ SRS ]    AC_000134 [ ENTREZ ]
RefSeq	NC_000002 [ SRS ]    NC_000002 [ ENTREZ ]
RefSeq	NT_005334 [ SRS ]    NT_005334 [ ENTREZ ]
RefSeq	NW_001838765 [ SRS ]    NW_001838765 [ ENTREZ ]
RefSeq	NW_927719 [ SRS ]    NW_927719 [ ENTREZ ]
AceView	SOX11 AceView - NCBI
Unigene	Hs.432638 [ SRS ]    Hs.432638 [ NCBI ]     HS432638 [ spliceNest ]
Fast-db	966 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P35716 [ SRS]    P35716 [ EXPASY ]     P35716 [ INTERPRO ]     P35716 [ UNIPROT ]
Prosite	PS50118 HMG_BOX_2 [ SRS ]    PS50118 HMG_BOX_2 [ Expasy ]
Interpro	IPR000910 HMG_1/2_box [ SRS ]    IPR000910 HMG_1/2_box [ EBI ]
Interpro	IPR017386 SOX-12/11/4a [ SRS ]    IPR017386 SOX-12/11/4a [ EBI ]
CluSTr	P35716
Pfam	PF00505 HMG_box [ SRS ]    PF00505 HMG_box [ Sanger ]    pfam00505 [ NCBI-CDD ]
Smart	SM00398 HMG [EMBL]
Blocks	P35716
HPRD	02940
	Protein Interaction databases
DIP	P35716
IntAct	P35716
	Polymorphism : SNP, mutations, diseases
OMIM	600898    [ map ]
GENECLINICS	600898
SNP	SOX11 [dbSNP-NCBI]
SNP	NM_003108 [SNP-NCI]
SNP	SOX11 [GeneSNPs - Utah]  SOX11] [HGBASE - SRS]
HAPMAP	SOX11 [HAPMAP]
HGMD	SOX11
	General knowledge
Family Browser	SOX11 [UCSC Family Browser]
SOURCE	NM_003108
SMD	Hs.432638
SAGE	Hs.432638
GO	DNA binding [Amigo]  DNA binding
GO	nucleus [Amigo]  nucleus
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	nervous system development [Amigo]  nervous system development
PubGene	SOX11
TreeFam	SOX11
CTD	6664 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	SOX11 Related clones (RZPD - Berlin)
	PubMed
PubMed	16 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:33:11 2008