SOX4 (SRY (sex determining region Y)-box 4)

Identity

Other names	EVI16
HGNC	SOX4
Location	6p22.3
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	SOX4   11200
Entrez_Gene	SOX4  6659  SRY (sex determining region Y)-box 4
	Cards
GeneCards	SOX4
Ensembl	SOX4 [Search_View]   ENSG00000124766 [Gene_View]
Genatlas	SOX4
GeneLynx	SOX4
eGenome	SOX4
euGene	6659
	Genomic and cartography
GoldenPath	SOX4  -  6p22.3   chr6:21701951-21706828 +  6p22.3   [Description]    (hg18-March_2006)
Ensembl	SOX4 - 6p22.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	SOX4
	Gene and transcription
Genbank	AF070669 [ ENTREZ ]
Genbank	AF124147 [ ENTREZ ]
Genbank	AJ420500 [ ENTREZ ]
Genbank	BC072668 [ ENTREZ ]
Genbank	BM459088 [ ENTREZ ]
RefSeq	NM_003107 [ SRS ]    NM_003107 [ ENTREZ ]
RefSeq	AC_000049 [ SRS ]    AC_000049 [ ENTREZ ]
RefSeq	AC_000138 [ SRS ]    AC_000138 [ ENTREZ ]
RefSeq	NC_000006 [ SRS ]    NC_000006 [ ENTREZ ]
RefSeq	NT_007592 [ SRS ]    NT_007592 [ ENTREZ ]
RefSeq	NW_001838973 [ SRS ]    NW_001838973 [ ENTREZ ]
RefSeq	NW_922984 [ SRS ]    NW_922984 [ ENTREZ ]
AceView	SOX4 AceView - NCBI
Unigene	Hs.699195 [ SRS ]    Hs.699195 [ NCBI ]     HS699195 [ spliceNest ]
Fast-db	3390 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q06945 [ SRS]    Q06945 [ EXPASY ]     Q06945 [ INTERPRO ]     Q06945 [ UNIPROT ]
Prosite	PS50118 HMG_BOX_2 [ SRS ]    PS50118 HMG_BOX_2 [ Expasy ]
Interpro	IPR000910 HMG_1/2_box [ SRS ]    IPR000910 HMG_1/2_box [ EBI ]
Interpro	IPR017386 SOX-12/11/4a [ SRS ]    IPR017386 SOX-12/11/4a [ EBI ]
CluSTr	Q06945
Pfam	PF00505 HMG_box [ SRS ]    PF00505 HMG_box [ Sanger ]    pfam00505 [ NCBI-CDD ]
Smart	SM00398 HMG [EMBL]
Blocks	Q06945
HPRD	01695
	Protein Interaction databases
DIP	Q06945
IntAct	Q06945
	Polymorphism : SNP, mutations, diseases
OMIM	184430    [ map ]
GENECLINICS	184430
SNP	SOX4 [dbSNP-NCBI]
SNP	NM_003107 [SNP-NCI]
SNP	SOX4 [GeneSNPs - Utah]  SOX4] [HGBASE - SRS]
HAPMAP	SOX4 [HAPMAP]
COSMIC	SOX4 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	SOX4
	General knowledge
Family Browser	SOX4 [UCSC Family Browser]
SOURCE	NM_003107
SMD	Hs.699195
SAGE	Hs.699195
GO	transcription factor activity [Amigo]  transcription factor activity
GO	nucleus [Amigo]  nucleus
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
PubGene	SOX4
TreeFam	SOX4
CTD	6659 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	SOX4 Related clones (RZPD - Berlin)
	PubMed
PubMed	26 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Sep 29 18:23:15 2008