SP4 (Sp4 transcription factor)

Identity

Other names	HF1B
	MGC130008
	MGC130009
	SPR-1
HGNC	SP4
Location	7p15
Location_base_pair	Starts at 21434214 and ends at 21520676 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

External links

	Nomenclature
HGNC	SP4   11209
Entrez_Gene	SP4  6671  Sp4 transcription factor
	Cards
GeneCards	SP4
Ensembl	[Gene_View]  SP4 [Vega]
Genatlas	SP4
	Genomic and cartography
GoldenPath	SP4  -  7p15   chr7:21434214-21520676 +  7p15.3   [Description]    (hg18-March_2006)
Ensembl	SP4 - 7p15.3 [CytoView]
NCBI	Mapview
OMIM	600540 Disease map [OMIM]
HomoloGene	SP4
	Gene and transcription
Genbank	AK289728 [ ENTREZ ]
Genbank	AK296749 [ ENTREZ ]
Genbank	BC015512 [ ENTREZ ]
Genbank	BC109300 [ ENTREZ ]
Genbank	BC109301 [ ENTREZ ]
RefSeq	NM_003112 [ SRS ]    NM_003112 [ ENTREZ ]
RefSeq	AC_000050 [ SRS ]    AC_000050 [ ENTREZ ]
RefSeq	AC_000068 [ SRS ]    AC_000068 [ ENTREZ ]
RefSeq	AC_000139 [ SRS ]    AC_000139 [ ENTREZ ]
RefSeq	NC_000007 [ SRS ]    NC_000007 [ ENTREZ ]
RefSeq	NT_007819 [ SRS ]    NT_007819 [ ENTREZ ]
RefSeq	NT_079592 [ SRS ]    NT_079592 [ ENTREZ ]
RefSeq	NW_001839003 [ SRS ]    NW_001839003 [ ENTREZ ]
RefSeq	NW_923240 [ SRS ]    NW_923240 [ ENTREZ ]
CCDS	SP4 CCDS - NCBI
AceView	SP4 AceView - NCBI
Unigene	Hs.88013 [ SRS ]    Hs.88013 [ NCBI ]
	Protein : pattern, domain, 3D structure
SwissProt	Q02446 [ SRS]    Q02446 [ EXPASY ]     Q02446 [ INTERPRO ]     Q02446 [ UNIPROT ] Q02446 [ VarSplice FASTA ]
Prosite	PS00028 ZINC_FINGER_C2H2_1 [ SRS ]    PS00028 ZINC_FINGER_C2H2_1 [ Expasy ]
Prosite	PS50157 ZINC_FINGER_C2H2_2 [ SRS ]    PS50157 ZINC_FINGER_C2H2_2 [ Expasy ]
Interpro	IPR007087 Znf_C2H2 [ SRS ]    IPR007087 Znf_C2H2 [ EBI ]
Interpro	IPR015880 Znf_C2H2-like [ SRS ]    IPR015880 Znf_C2H2-like [ EBI ]
Interpro	IPR013087 Znf_C2H2/integrase_DNA-bd [ SRS ]    IPR013087 Znf_C2H2/integrase_DNA-bd [ EBI ]
CluSTr	Q02446
Pfam	PF00096 zf-C2H2 [ SRS ]    PF00096 zf-C2H2 [ Sanger ]    pfam00096 [ NCBI-CDD ]
Smart	SM00355 ZnF_C2H2 [EMBL]
Prodom	PD000003 Znf_C2H2[INRA-Toulouse]
Prodom	Q02446 SP4_HUMAN [ Domain structure ]   Q02446 SP4_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	Q02446
HPRD	02764
	Protein Interaction databases
DIP	Q02446
IntAct	Q02446
	Polymorphism : SNP, mutations, diseases
OMIM	600540    [ map ]
GENETests	600540
SNP	SP4 [dbSNP-NCBI]
SNP	NM_003112 [SNP-NCI]
SNP	SP4 [GeneSNPs - Utah]  SP4] [HGBASE - SRS]
HAPMAP	SP4 [HAPMAP]
HGMD	SP4
Genetic Association	SP4
CDC HuGE	SP4
	General knowledge
Family Browser	SP4 [UCSC Family Browser]
SOURCE	NM_003112
SMD	Hs.88013
SAGE	Hs.88013
GO	nucleic acid binding [Amigo]  nucleic acid binding
GO	DNA binding [Amigo]  DNA binding
GO	RNA polymerase II transcription factor activity [Amigo]  RNA polymerase II transcription factor activity
GO	transcription coactivator activity [Amigo]  transcription coactivator activity
GO	intracellular [Amigo]  intracellular
GO	nucleus [Amigo]  nucleus
GO	transcription [Amigo]  transcription
GO	regulation of transcription from RNA polymerase II promoter [Amigo]  regulation of transcription from RNA polymerase II promoter
GO	zinc ion binding [Amigo]  zinc ion binding
GO	metal ion binding [Amigo]  metal ion binding
PubGene	SP4
TreeFam	SP4
CTD	6671 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	SP4 Related clones (RZPD - Berlin)
	PubMed
PubMed	19 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Dec 6 17:09:39 2008