TRIM21 (tripartite motif-containing 21)

Identity

Other names	RNF81
	RO52
	SSA
	SSA1
HGNC	TRIM21
Location	11p15.5-p15.3
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	TRIM21   11312
Entrez_Gene	TRIM21  6737  tripartite motif-containing 21
	Cards
GeneCards	TRIM21
Ensembl	TRIM21 [Search_View]   ENSG00000184895 [Gene_View]
Genatlas	TRIM21
GeneLynx	TRIM21
eGenome	TRIM21
euGene	6737
	Genomic and cartography
GoldenPath	TRIM21  -     chr11:4362703-4371502 -  11p15.4   [Description]    (hg18-March_2006)
Ensembl	TRIM21 - 11p15.4 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	TRIM21
	Gene and transcription
Genbank	AK225564 [ ENTREZ ]
Genbank	AW575137 [ ENTREZ ]
Genbank	AY742713 [ ENTREZ ]
Genbank	BC010861 [ ENTREZ ]
Genbank	BP280435 [ ENTREZ ]
RefSeq	NM_003141 [ SRS ]    NM_003141 [ ENTREZ ]
RefSeq	AC_000054 [ SRS ]    AC_000054 [ ENTREZ ]
RefSeq	AC_000143 [ SRS ]    AC_000143 [ ENTREZ ]
RefSeq	NC_000011 [ SRS ]    NC_000011 [ ENTREZ ]
RefSeq	NT_009237 [ SRS ]    NT_009237 [ ENTREZ ]
RefSeq	NW_001838021 [ SRS ]    NW_001838021 [ ENTREZ ]
RefSeq	NW_925006 [ SRS ]    NW_925006 [ ENTREZ ]
AceView	TRIM21 AceView - NCBI
Unigene	Hs.532357 [ SRS ]    Hs.532357 [ NCBI ]     HS532357 [ spliceNest ]
Fast-db	1564 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P19474 [ SRS]    P19474 [ EXPASY ]     P19474 [ INTERPRO ]     P19474 [ UNIPROT ]
Prosite	PS50188 B302_SPRY [ SRS ]    PS50188 B302_SPRY [ Expasy ]
Prosite	PS50119 ZF_BBOX [ SRS ]    PS50119 ZF_BBOX [ Expasy ]
Prosite	PS00518 ZF_RING_1 [ SRS ]    PS00518 ZF_RING_1 [ Expasy ]
Prosite	PS50089 ZF_RING_2 [ SRS ]    PS50089 ZF_RING_2 [ Expasy ]
Interpro	IPR001870 B302 [ SRS ]    IPR001870 B302 [ EBI ]
Interpro	IPR003879 Butyrophylin [ SRS ]    IPR003879 Butyrophylin [ EBI ]
Interpro	IPR006574 PRY [ SRS ]    IPR006574 PRY [ EBI ]
Interpro	IPR003877 SPRY_rcpt [ SRS ]    IPR003877 SPRY_rcpt [ EBI ]
Interpro	IPR000315 Znf_B-box [ SRS ]    IPR000315 Znf_B-box [ EBI ]
Interpro	IPR001841 Znf_RING [ SRS ]    IPR001841 Znf_RING [ EBI ]
Interpro	IPR013083 Znf_RING/FYVE/PHD [ SRS ]    IPR013083 Znf_RING/FYVE/PHD [ EBI ]
CluSTr	P19474
Pfam	PF00622 SPRY [ SRS ]    PF00622 SPRY [ Sanger ]    pfam00622 [ NCBI-CDD ]
Pfam	PF00643 zf-B_box [ SRS ]    PF00643 zf-B_box [ Sanger ]    pfam00643 [ NCBI-CDD ]
Pfam	PF00097 zf-C3HC4 [ SRS ]    PF00097 zf-C3HC4 [ Sanger ]    pfam00097 [ NCBI-CDD ]
Smart	SM00336 BBOX [EMBL]
Smart	SM00589 PRY [EMBL]
Smart	SM00184 RING [EMBL]
Smart	SM00449 SPRY [EMBL]
Blocks	P19474
PDB	2IWG [ SRS ]    2IWG [ PdbSum ],   2IWG [ IMB ]   2IWG [ RSDB ]
HPRD	00170
	Protein Interaction databases
DIP	P19474
IntAct	P19474
	Polymorphism : SNP, mutations, diseases
OMIM	109092    [ map ]
GENECLINICS	109092
SNP	TRIM21 [dbSNP-NCBI]
SNP	NM_003141 [SNP-NCI]
SNP	TRIM21 [GeneSNPs - Utah]  TRIM21] [HGBASE - SRS]
HAPMAP	TRIM21 [HAPMAP]
COSMIC	TRIM21 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	TRIM21
	General knowledge
Family Browser	TRIM21 [UCSC Family Browser]
SOURCE	NM_003141
SMD	Hs.532357
SAGE	Hs.532357
GO	DNA binding [Amigo]  DNA binding
GO	RNA binding [Amigo]  RNA binding
GO	protein binding [Amigo]  protein binding
GO	intracellular [Amigo]  intracellular
GO	nucleus [Amigo]  nucleus
GO	cytoplasm [Amigo]  cytoplasm
GO	zinc ion binding [Amigo]  zinc ion binding
GO	ribonucleoprotein complex [Amigo]  ribonucleoprotein complex
GO	metal ion binding [Amigo]  metal ion binding
PubGene	TRIM21
TreeFam	TRIM21
CTD	6737 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	TRIM21 Related clones (RZPD - Berlin)
	PubMed
PubMed	46 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:36:22 2008