TRIM26 (tripartite motif-containing 26)

Identity

Other names	AFP
	RNF95
	ZNF173
HGNC	TRIM26
Location	6p21.3
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	TRIM26   12962
Entrez_Gene	TRIM26  7726  tripartite motif-containing 26
	Cards
GeneCards	TRIM26
Ensembl	TRIM26 [Search_View]   ENSG00000137313 [Gene_View]
Genatlas	TRIM26
GeneLynx	TRIM26
eGenome	TRIM26
euGene	7726
	Genomic and cartography
GoldenPath	TRIM26  -  6p21.3   chr6:30260211-30289132 -  6p21.33   [Description]    (hg18-March_2006)
Ensembl	TRIM26 - 6p21.33 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	TRIM26
	Gene and transcription
Genbank	AK096996 [ ENTREZ ]
Genbank	AK314782 [ ENTREZ ]
Genbank	BC021115 [ ENTREZ ]
Genbank	BC024039 [ ENTREZ ]
Genbank	BC032297 [ ENTREZ ]
RefSeq	NM_003449 [ SRS ]    NM_003449 [ ENTREZ ]
RefSeq	AC_000049 [ SRS ]    AC_000049 [ ENTREZ ]
RefSeq	AC_000138 [ SRS ]    AC_000138 [ ENTREZ ]
RefSeq	NC_000006 [ SRS ]    NC_000006 [ ENTREZ ]
RefSeq	NT_007592 [ SRS ]    NT_007592 [ ENTREZ ]
RefSeq	NT_113891 [ SRS ]    NT_113891 [ ENTREZ ]
RefSeq	NT_113893 [ SRS ]    NT_113893 [ ENTREZ ]
RefSeq	NW_001838980 [ SRS ]    NW_001838980 [ ENTREZ ]
RefSeq	NW_923073 [ SRS ]    NW_923073 [ ENTREZ ]
AceView	TRIM26 AceView - NCBI
Unigene	Hs.485041 [ SRS ]    Hs.485041 [ NCBI ]     HS485041 [ spliceNest ]
Fast-db	5414 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q12899 [ SRS]    Q12899 [ EXPASY ]     Q12899 [ INTERPRO ]     Q12899 [ UNIPROT ]
Prosite	PS50188 B302_SPRY [ SRS ]    PS50188 B302_SPRY [ Expasy ]
Prosite	PS50119 ZF_BBOX [ SRS ]    PS50119 ZF_BBOX [ Expasy ]
Prosite	PS00518 ZF_RING_1 [ SRS ]    PS00518 ZF_RING_1 [ Expasy ]
Prosite	PS50089 ZF_RING_2 [ SRS ]    PS50089 ZF_RING_2 [ Expasy ]
Interpro	IPR001870 B302 [ SRS ]    IPR001870 B302 [ EBI ]
Interpro	IPR003879 Butyrophylin [ SRS ]    IPR003879 Butyrophylin [ EBI ]
Interpro	IPR006574 PRY [ SRS ]    IPR006574 PRY [ EBI ]
Interpro	IPR003877 SPRY_rcpt [ SRS ]    IPR003877 SPRY_rcpt [ EBI ]
Interpro	IPR000315 Znf_B-box [ SRS ]    IPR000315 Znf_B-box [ EBI ]
Interpro	IPR001841 Znf_RING [ SRS ]    IPR001841 Znf_RING [ EBI ]
Interpro	IPR013083 Znf_RING/FYVE/PHD [ SRS ]    IPR013083 Znf_RING/FYVE/PHD [ EBI ]
CluSTr	Q12899
Pfam	PF00622 SPRY [ SRS ]    PF00622 SPRY [ Sanger ]    pfam00622 [ NCBI-CDD ]
Pfam	PF00643 zf-B_box [ SRS ]    PF00643 zf-B_box [ Sanger ]    pfam00643 [ NCBI-CDD ]
Pfam	PF00097 zf-C3HC4 [ SRS ]    PF00097 zf-C3HC4 [ Sanger ]    pfam00097 [ NCBI-CDD ]
Smart	SM00336 BBOX [EMBL]
Smart	SM00589 PRY [EMBL]
Smart	SM00184 RING [EMBL]
Smart	SM00449 SPRY [EMBL]
Blocks	Q12899
HPRD	02901
	Protein Interaction databases
DIP	Q12899
IntAct	Q12899
	Polymorphism : SNP, mutations, diseases
OMIM	600830    [ map ]
GENECLINICS	600830
SNP	TRIM26 [dbSNP-NCBI]
SNP	NM_003449 [SNP-NCI]
SNP	TRIM26 [GeneSNPs - Utah]  TRIM26] [HGBASE - SRS]
HAPMAP	TRIM26 [HAPMAP]
COSMIC	TRIM26 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	TRIM26
	General knowledge
Family Browser	TRIM26 [UCSC Family Browser]
SOURCE	NM_003449
SMD	Hs.485041
SAGE	Hs.485041
GO	DNA binding [Amigo]  DNA binding
GO	protein binding [Amigo]  protein binding
GO	protein binding [Amigo]  protein binding
GO	intracellular [Amigo]  intracellular
GO	cytoplasm [Amigo]  cytoplasm
GO	zinc ion binding [Amigo]  zinc ion binding
GO	metal ion binding [Amigo]  metal ion binding
PubGene	TRIM26
TreeFam	TRIM26
CTD	7726 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	TRIM26 Related clones (RZPD - Berlin)
	PubMed
PubMed	7 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:36:23 2008