TRIM27 (tripartite motif-containing 27)

Identity

Other names	RFP
	RNF76
HGNC	TRIM27
Location	6p22
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

External links

	Nomenclature
HGNC	TRIM27   9975
Entrez_Gene	TRIM27  5987  tripartite motif-containing 27
	Cards
GeneCards	TRIM27
Ensembl	TRIM27 [Search_View]   ENSG00000204713 [Gene_View]
Genatlas	TRIM27
GeneLynx	TRIM27
eGenome	TRIM27
euGene	5987
	Genomic and cartography
GoldenPath	TRIM27  -  6p22   chr6:28978758-28999747 -  6p22.1   [Description]    (hg18-March_2006)
Ensembl	TRIM27 - 6p22.1 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	TRIM27
	Gene and transcription
Genbank	AB209885 [ ENTREZ ]
Genbank	AF230393 [ ENTREZ ]
Genbank	AF230394 [ ENTREZ ]
Genbank	AJ420519 [ ENTREZ ]
Genbank	BC013580 [ ENTREZ ]
RefSeq	NM_006510 [ SRS ]    NM_006510 [ ENTREZ ]
RefSeq	AC_000049 [ SRS ]    AC_000049 [ ENTREZ ]
RefSeq	AC_000138 [ SRS ]    AC_000138 [ ENTREZ ]
RefSeq	NC_000006 [ SRS ]    NC_000006 [ ENTREZ ]
RefSeq	NT_007592 [ SRS ]    NT_007592 [ ENTREZ ]
RefSeq	NT_113891 [ SRS ]    NT_113891 [ ENTREZ ]
RefSeq	NT_113892 [ SRS ]    NT_113892 [ ENTREZ ]
RefSeq	NW_001838980 [ SRS ]    NW_001838980 [ ENTREZ ]
RefSeq	NW_923073 [ SRS ]    NW_923073 [ ENTREZ ]
AceView	TRIM27 AceView - NCBI
Unigene	Hs.440382 [ SRS ]    Hs.440382 [ NCBI ]     HS440382 [ spliceNest ]
	Protein : pattern, domain, 3D structure
SwissProt	P14373 [ SRS]    P14373 [ EXPASY ]     P14373 [ INTERPRO ]     P14373 [ UNIPROT ]
Prosite	PS50188 B302_SPRY [ SRS ]    PS50188 B302_SPRY [ Expasy ]
Prosite	PS50119 ZF_BBOX [ SRS ]    PS50119 ZF_BBOX [ Expasy ]
Prosite	PS00518 ZF_RING_1 [ SRS ]    PS00518 ZF_RING_1 [ Expasy ]
Prosite	PS50089 ZF_RING_2 [ SRS ]    PS50089 ZF_RING_2 [ Expasy ]
Interpro	IPR001870 B302 [ SRS ]    IPR001870 B302 [ EBI ]
Interpro	IPR003879 Butyrophylin [ SRS ]    IPR003879 Butyrophylin [ EBI ]
Interpro	IPR006574 PRY [ SRS ]    IPR006574 PRY [ EBI ]
Interpro	IPR003877 SPRY_rcpt [ SRS ]    IPR003877 SPRY_rcpt [ EBI ]
Interpro	IPR000315 Znf_B-box [ SRS ]    IPR000315 Znf_B-box [ EBI ]
Interpro	IPR001841 Znf_RING [ SRS ]    IPR001841 Znf_RING [ EBI ]
Interpro	IPR013083 Znf_RING/FYVE/PHD [ SRS ]    IPR013083 Znf_RING/FYVE/PHD [ EBI ]
CluSTr	P14373
Pfam	PF00622 SPRY [ SRS ]    PF00622 SPRY [ Sanger ]    pfam00622 [ NCBI-CDD ]
Pfam	PF00643 zf-B_box [ SRS ]    PF00643 zf-B_box [ Sanger ]    pfam00643 [ NCBI-CDD ]
Pfam	PF00097 zf-C3HC4 [ SRS ]    PF00097 zf-C3HC4 [ Sanger ]    pfam00097 [ NCBI-CDD ]
Smart	SM00336 BBOX [EMBL]
Smart	SM00589 PRY [EMBL]
Smart	SM00184 RING [EMBL]
Smart	SM00449 SPRY [EMBL]
Blocks	P14373
HPRD	15996
	Protein Interaction databases
DIP	P14373
IntAct	P14373
	Polymorphism : SNP, mutations, diseases
OMIM	602165    [ map ]
GENECLINICS	602165
SNP	TRIM27 [dbSNP-NCBI]
SNP	NM_006510 [SNP-NCI]
SNP	TRIM27 [GeneSNPs - Utah]  TRIM27] [HGBASE - SRS]
HAPMAP	TRIM27 [HAPMAP]
COSMIC	TRIM27 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	TRIM27
	General knowledge
Family Browser	TRIM27 [UCSC Family Browser]
SOURCE	NM_006510
SMD	Hs.440382
SAGE	Hs.440382
GO	negative regulation of transcription from RNA polymerase II promoter [Amigo]  negative regulation of transcription from RNA polymerase II promoter
GO	DNA binding [Amigo]  DNA binding
GO	transmembrane receptor protein tyrosine kinase activity [Amigo]  transmembrane receptor protein tyrosine kinase activity
GO	protein binding [Amigo]  protein binding
GO	intracellular [Amigo]  intracellular
GO	membrane fraction [Amigo]  membrane fraction
GO	nucleus [Amigo]  nucleus
GO	nucleoplasm [Amigo]  nucleoplasm
GO	cytoplasm [Amigo]  cytoplasm
GO	integral to plasma membrane [Amigo]  integral to plasma membrane
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	spermatogenesis [Amigo]  spermatogenesis
GO	zinc ion binding [Amigo]  zinc ion binding
GO	cell proliferation [Amigo]  cell proliferation
GO	nuclear membrane [Amigo]  nuclear membrane
GO	negative regulation of gene expression, epigenetic [Amigo]  negative regulation of gene expression, epigenetic
GO	metal ion binding [Amigo]  metal ion binding
PubGene	TRIM27
TreeFam	TRIM27
CTD	5987 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	TRIM27 Related clones (RZPD - Berlin)
	PubMed
PubMed	25 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:36:24 2008