TRIM5 (tripartite motif-containing 5)

Identity

Other names	RNF88
	TRIM5alpha
HGNC	TRIM5
Location	11p15
Location_base_pair	Starts at 5641364 and ends at 5662869 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	TRIM5   16276
Entrez_Gene	TRIM5  85363  tripartite motif-containing 5
	Cards
GeneCards	TRIM5
Ensembl	TRIM5 [Search_View]   ENSG00000132256 [Gene_View]
Genatlas	TRIM5
GeneLynx	TRIM5
eGenome	TRIM5
euGene	85363
	Genomic and cartography
GoldenPath	TRIM5  -  11p15   chr11:5641364-5662869 -  11p15.4   [Description]    (hg18-March_2006)
Ensembl	TRIM5 - 11p15.4 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	TRIM5
	Gene and transcription
Genbank	AB362928 [ ENTREZ ]
Genbank	AF220025 [ ENTREZ ]
Genbank	AF220026 [ ENTREZ ]
Genbank	AF220027 [ ENTREZ ]
Genbank	AF220028 [ ENTREZ ]
RefSeq	NM_033034 [ SRS ]    NM_033034 [ ENTREZ ]
RefSeq	NM_033092 [ SRS ]    NM_033092 [ ENTREZ ]
RefSeq	NM_033093 [ SRS ]    NM_033093 [ ENTREZ ]
RefSeq	AC_000054 [ SRS ]    AC_000054 [ ENTREZ ]
RefSeq	AC_000143 [ SRS ]    AC_000143 [ ENTREZ ]
RefSeq	NC_000011 [ SRS ]    NC_000011 [ ENTREZ ]
RefSeq	NT_009237 [ SRS ]    NT_009237 [ ENTREZ ]
RefSeq	NW_001838021 [ SRS ]    NW_001838021 [ ENTREZ ]
RefSeq	NW_925006 [ SRS ]    NW_925006 [ ENTREZ ]
AceView	TRIM5 AceView - NCBI
Unigene	Hs.370515 [ SRS ]    Hs.370515 [ NCBI ]     HS370515 [ spliceNest ]
Fast-db	1751 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q05CU3 [ SRS]    Q05CU3 [ EXPASY ]     Q05CU3 [ INTERPRO ]     Q05CU3 [ UNIPROT ]
Prosite	PS50119 ZF_BBOX [ SRS ]    PS50119 ZF_BBOX [ Expasy ]
Prosite	PS00518 ZF_RING_1 [ SRS ]    PS00518 ZF_RING_1 [ Expasy ]
Prosite	PS50089 ZF_RING_2 [ SRS ]    PS50089 ZF_RING_2 [ Expasy ]
Interpro	IPR000315 Znf_B-box [ SRS ]    IPR000315 Znf_B-box [ EBI ]
Interpro	IPR001841 Znf_RING [ SRS ]    IPR001841 Znf_RING [ EBI ]
Interpro	IPR013083 Znf_RING/FYVE/PHD [ SRS ]    IPR013083 Znf_RING/FYVE/PHD [ EBI ]
CluSTr	Q05CU3
Pfam	PF00643 zf-B_box [ SRS ]    PF00643 zf-B_box [ Sanger ]    pfam00643 [ NCBI-CDD ]
Pfam	PF00097 zf-C3HC4 [ SRS ]    PF00097 zf-C3HC4 [ Sanger ]    pfam00097 [ NCBI-CDD ]
Smart	SM00336 BBOX [EMBL]
Smart	SM00184 RING [EMBL]
Blocks	Q05CU3
HPRD	07004
	Protein Interaction databases
DIP	Q05CU3
IntAct	Q05CU3
	Polymorphism : SNP, mutations, diseases
OMIM	608487    [ map ]
GENECLINICS	608487
SNP	TRIM5 [dbSNP-NCBI]
SNP	NM_033034 [SNP-NCI]
SNP	NM_033092 [SNP-NCI]
SNP	NM_033093 [SNP-NCI]
SNP	TRIM5 [GeneSNPs - Utah]  TRIM5] [HGBASE - SRS]
HAPMAP	TRIM5 [HAPMAP]
COSMIC	TRIM5 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	TRIM5
	General knowledge
Family Browser	TRIM5 [UCSC Family Browser]
SOURCE	NM_033034
SOURCE	NM_033092
SOURCE	NM_033093
SMD	Hs.370515
SAGE	Hs.370515
GO	protein binding [Amigo]  protein binding
GO	protein binding [Amigo]  protein binding
GO	intracellular [Amigo]  intracellular
GO	cytoplasm [Amigo]  cytoplasm
GO	zinc ion binding [Amigo]  zinc ion binding
GO	response to virus [Amigo]  response to virus
GO	ligase activity [Amigo]  ligase activity
GO	interspecies interaction between organisms [Amigo]  interspecies interaction between organisms
GO	metal ion binding [Amigo]  metal ion binding
KEGG	Tryptophan metabolism
PubGene	TRIM5
TreeFam	TRIM5
CTD	85363 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	TRIM5 Related clones (RZPD - Berlin)
	PubMed
PubMed	46 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:36:20 2008