U2AF1 (U2 small nuclear RNA auxiliary factor 1)

Identity

Other names	DKFZp313J1712
	FP793
	RN
	RNU2AF1
	U2AF35
	U2AFBP
HGNC	U2AF1
Location	21q22.3
Location_base_pair	Starts at 43386135 and ends at 43400757 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	U2AF1   12453
Entrez_Gene	U2AF1  7307  U2 small nuclear RNA auxiliary factor 1
	Cards
GeneCards	U2AF1
Ensembl	U2AF1 [Search_View]   ENSG00000160201 [Gene_View]
Genatlas	U2AF1
GeneLynx	U2AF1
eGenome	U2AF1
euGene	7307
	Genomic and cartography
GoldenPath	U2AF1  -  21q22.3   chr21:43386135-43400757 -  21q22.3   [Description]    (hg18-March_2006)
Ensembl	U2AF1 - 21q22.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	U2AF1
	Gene and transcription
Genbank	AF370386 [ ENTREZ ]
Genbank	AJ627978 [ ENTREZ ]
Genbank	AK022152 [ ENTREZ ]
Genbank	AK023589 [ ENTREZ ]
Genbank	AK094435 [ ENTREZ ]
RefSeq	NM_001025203 [ SRS ]    NM_001025203 [ ENTREZ ]
RefSeq	NM_001025204 [ SRS ]    NM_001025204 [ ENTREZ ]
RefSeq	NM_006758 [ SRS ]    NM_006758 [ ENTREZ ]
RefSeq	AC_000064 [ SRS ]    AC_000064 [ ENTREZ ]
RefSeq	AC_000153 [ SRS ]    AC_000153 [ ENTREZ ]
RefSeq	NC_000021 [ SRS ]    NC_000021 [ ENTREZ ]
RefSeq	NT_030188 [ SRS ]    NT_030188 [ ENTREZ ]
RefSeq	NW_001838715 [ SRS ]    NW_001838715 [ ENTREZ ]
RefSeq	NW_927384 [ SRS ]    NW_927384 [ ENTREZ ]
AceView	U2AF1 AceView - NCBI
Unigene	Hs.365116 [ SRS ]    Hs.365116 [ NCBI ]     HS365116 [ spliceNest ]
Fast-db	3696 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q01081 [ SRS]    Q01081 [ EXPASY ]     Q01081 [ INTERPRO ]     Q01081 [ UNIPROT ]
Prosite	PS50102 RRM [ SRS ]    PS50102 RRM [ Expasy ]
Prosite	PS50103 ZF_C3H1 [ SRS ]    PS50103 ZF_C3H1 [ Expasy ]
Interpro	IPR012677 a_b_plait_nuc_bd [ SRS ]    IPR012677 a_b_plait_nuc_bd [ EBI ]
Interpro	IPR000504 RRM_RNP1 [ SRS ]    IPR000504 RRM_RNP1 [ EBI ]
Interpro	IPR009145 U2_small [ SRS ]    IPR009145 U2_small [ EBI ]
Interpro	IPR000571 Znf_CCCH [ SRS ]    IPR000571 Znf_CCCH [ EBI ]
CluSTr	Q01081
Pfam	PF00076 RRM_1 [ SRS ]    PF00076 RRM_1 [ Sanger ]    pfam00076 [ NCBI-CDD ]
Pfam	PF00642 zf-CCCH [ SRS ]    PF00642 zf-CCCH [ Sanger ]    pfam00642 [ NCBI-CDD ]
Smart	SM00360 RRM [EMBL]
Smart	SM00356 ZnF_C3H1 [EMBL]
Blocks	Q01081
PDB	1JMT [ SRS ]    1JMT [ PdbSum ],   1JMT [ IMB ]   1JMT [ RSDB ]
HPRD	01871
	Protein Interaction databases
DIP	Q01081
IntAct	Q01081
	Polymorphism : SNP, mutations, diseases
OMIM	191317    [ map ]
GENECLINICS	191317
SNP	U2AF1 [dbSNP-NCBI]
SNP	NM_001025203 [SNP-NCI]
SNP	NM_001025204 [SNP-NCI]
SNP	NM_006758 [SNP-NCI]
SNP	U2AF1 [GeneSNPs - Utah]  U2AF1] [HGBASE - SRS]
HAPMAP	U2AF1 [HAPMAP]
HGMD	U2AF1
	General knowledge
Family Browser	U2AF1 [UCSC Family Browser]
SOURCE	NM_001025203
SOURCE	NM_001025204
SOURCE	NM_006758
SMD	Hs.365116
SAGE	Hs.365116
GO	nucleotide binding [Amigo]  nucleotide binding
GO	nuclear mRNA splicing, via spliceosome [Amigo]  nuclear mRNA splicing, via spliceosome
GO	nuclear mRNA splicing, via spliceosome [Amigo]  nuclear mRNA splicing, via spliceosome
GO	RNA binding [Amigo]  RNA binding
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	spliceosome [Amigo]  spliceosome
GO	zinc ion binding [Amigo]  zinc ion binding
GO	RNA splicing [Amigo]  RNA splicing
GO	Cajal body [Amigo]  Cajal body
GO	metal ion binding [Amigo]  metal ion binding
BIOCARTA	Spliceosomal Assembly    [Genes]
PubGene	U2AF1
TreeFam	U2AF1
CTD	7307 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	U2AF1 Related clones (RZPD - Berlin)
	PubMed
PubMed	44 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 15:06:32 2008