UBB (ubiquitin B)

Identity

Other names	FLJ25987
	MGC8385
HGNC	UBB
Location	17p12-p11.2
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	UBB   12463
Entrez_Gene	UBB  7314  ubiquitin B
	Cards
GeneCards	UBB
Ensembl	UBB [Search_View]   ENSG00000170315 [Gene_View]
Genatlas	UBB
GeneLynx	UBB
eGenome	UBB
euGene	7314
	Genomic and cartography
GoldenPath	UBB  -     chr17:16225092-16226779 +  17p11.2   [Description]    (hg18-March_2006)
Ensembl	UBB - 17p11.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	UBB
	Gene and transcription
Genbank	AK129498 [ ENTREZ ]
Genbank	BC000379 [ ENTREZ ]
Genbank	BC009301 [ ENTREZ ]
Genbank	BC015127 [ ENTREZ ]
Genbank	BC026301 [ ENTREZ ]
RefSeq	NM_018955 [ SRS ]    NM_018955 [ ENTREZ ]
RefSeq	AC_000060 [ SRS ]    AC_000060 [ ENTREZ ]
RefSeq	AC_000149 [ SRS ]    AC_000149 [ ENTREZ ]
RefSeq	NC_000017 [ SRS ]    NC_000017 [ ENTREZ ]
RefSeq	NT_010718 [ SRS ]    NT_010718 [ ENTREZ ]
RefSeq	NW_001838406 [ SRS ]    NW_001838406 [ ENTREZ ]
RefSeq	NW_926606 [ SRS ]    NW_926606 [ ENTREZ ]
AceView	UBB AceView - NCBI
Unigene	Hs.356190 [ SRS ]    Hs.356190 [ NCBI ]     HS356190 [ spliceNest ]
Fast-db	4809 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P62988 [ SRS]    P62988 [ EXPASY ]     P62988 [ INTERPRO ]     P62988 [ UNIPROT ]
Prosite	PS00299 UBIQUITIN_1 [ SRS ]    PS00299 UBIQUITIN_1 [ Expasy ]
Prosite	PS50053 UBIQUITIN_2 [ SRS ]    PS50053 UBIQUITIN_2 [ Expasy ]
Interpro	IPR000626 Ubiquitin [ SRS ]    IPR000626 Ubiquitin [ EBI ]
CluSTr	P62988
Pfam	PF00240 ubiquitin [ SRS ]    PF00240 ubiquitin [ Sanger ]    pfam00240 [ NCBI-CDD ]
Smart	SM00213 UBQ [EMBL]
Blocks	P62988
PDB	1C3T [ SRS ]    1C3T [ PdbSum ],   1C3T [ IMB ]   1C3T [ RSDB ]
PDB	1D3Z [ SRS ]    1D3Z [ PdbSum ],   1D3Z [ IMB ]   1D3Z [ RSDB ]
PDB	1F9J [ SRS ]    1F9J [ PdbSum ],   1F9J [ IMB ]   1F9J [ RSDB ]
PDB	1FXT [ SRS ]    1FXT [ PdbSum ],   1FXT [ IMB ]   1FXT [ RSDB ]
PDB	1G6J [ SRS ]    1G6J [ PdbSum ],   1G6J [ IMB ]   1G6J [ RSDB ]
PDB	1GJZ [ SRS ]    1GJZ [ PdbSum ],   1GJZ [ IMB ]   1GJZ [ RSDB ]
PDB	1NBF [ SRS ]    1NBF [ PdbSum ],   1NBF [ IMB ]   1NBF [ RSDB ]
PDB	1OGW [ SRS ]    1OGW [ PdbSum ],   1OGW [ IMB ]   1OGW [ RSDB ]
PDB	1Q5W [ SRS ]    1Q5W [ PdbSum ],   1Q5W [ IMB ]   1Q5W [ RSDB ]
PDB	1S1Q [ SRS ]    1S1Q [ PdbSum ],   1S1Q [ IMB ]   1S1Q [ RSDB ]
PDB	1SIF [ SRS ]    1SIF [ PdbSum ],   1SIF [ IMB ]   1SIF [ RSDB ]
PDB	1TBE [ SRS ]    1TBE [ PdbSum ],   1TBE [ IMB ]   1TBE [ RSDB ]
PDB	1UBI [ SRS ]    1UBI [ PdbSum ],   1UBI [ IMB ]   1UBI [ RSDB ]
PDB	1UBQ [ SRS ]    1UBQ [ PdbSum ],   1UBQ [ IMB ]   1UBQ [ RSDB ]
PDB	1XD3 [ SRS ]    1XD3 [ PdbSum ],   1XD3 [ IMB ]   1XD3 [ RSDB ]
PDB	1XQQ [ SRS ]    1XQQ [ PdbSum ],   1XQQ [ IMB ]   1XQQ [ RSDB ]
PDB	1YX5 [ SRS ]    1YX5 [ PdbSum ],   1YX5 [ IMB ]   1YX5 [ RSDB ]
PDB	1YX6 [ SRS ]    1YX6 [ PdbSum ],   1YX6 [ IMB ]   1YX6 [ RSDB ]
PDB	1ZGU [ SRS ]    1ZGU [ PdbSum ],   1ZGU [ IMB ]   1ZGU [ RSDB ]
PDB	1ZO6 [ SRS ]    1ZO6 [ PdbSum ],   1ZO6 [ IMB ]   1ZO6 [ RSDB ]
PDB	2AYO [ SRS ]    2AYO [ PdbSum ],   2AYO [ IMB ]   2AYO [ RSDB ]
PDB	2BGF [ SRS ]    2BGF [ PdbSum ],   2BGF [ IMB ]   2BGF [ RSDB ]
PDB	2DEN [ SRS ]    2DEN [ PdbSum ],   2DEN [ IMB ]   2DEN [ RSDB ]
PDB	2FUH [ SRS ]    2FUH [ PdbSum ],   2FUH [ IMB ]   2FUH [ RSDB ]
PDB	2G45 [ SRS ]    2G45 [ PdbSum ],   2G45 [ IMB ]   2G45 [ RSDB ]
PDB	2GBJ [ SRS ]    2GBJ [ PdbSum ],   2GBJ [ IMB ]   2GBJ [ RSDB ]
PDB	2GBK [ SRS ]    2GBK [ PdbSum ],   2GBK [ IMB ]   2GBK [ RSDB ]
PDB	2GBM [ SRS ]    2GBM [ PdbSum ],   2GBM [ IMB ]   2GBM [ RSDB ]
PDB	2GBN [ SRS ]    2GBN [ PdbSum ],   2GBN [ IMB ]   2GBN [ RSDB ]
PDB	2GBR [ SRS ]    2GBR [ PdbSum ],   2GBR [ IMB ]   2GBR [ RSDB ]
PDB	2HTH [ SRS ]    2HTH [ PdbSum ],   2HTH [ IMB ]   2HTH [ RSDB ]
PDB	2IBI [ SRS ]    2IBI [ PdbSum ],   2IBI [ IMB ]   2IBI [ RSDB ]
PDB	2J7Q [ SRS ]    2J7Q [ PdbSum ],   2J7Q [ IMB ]   2J7Q [ RSDB ]
PDB	2JF5 [ SRS ]    2JF5 [ PdbSum ],   2JF5 [ IMB ]   2JF5 [ RSDB ]
PDB	2NR2 [ SRS ]    2NR2 [ PdbSum ],   2NR2 [ IMB ]   2NR2 [ RSDB ]
PDB	2O6V [ SRS ]    2O6V [ PdbSum ],   2O6V [ IMB ]   2O6V [ RSDB ]
PDB	2OJR [ SRS ]    2OJR [ PdbSum ],   2OJR [ IMB ]   2OJR [ RSDB ]
PDB	2PE9 [ SRS ]    2PE9 [ PdbSum ],   2PE9 [ IMB ]   2PE9 [ RSDB ]
PDB	2PEA [ SRS ]    2PEA [ PdbSum ],   2PEA [ IMB ]   2PEA [ RSDB ]
PDB	2ZCB [ SRS ]    2ZCB [ PdbSum ],   2ZCB [ IMB ]   2ZCB [ RSDB ]
PDB	3BY4 [ SRS ]    3BY4 [ PdbSum ],   3BY4 [ IMB ]   3BY4 [ RSDB ]
PDB	3C0R [ SRS ]    3C0R [ PdbSum ],   3C0R [ IMB ]   3C0R [ RSDB ]
HPRD	06771
	Protein Interaction databases
DIP	P62988
IntAct	P62988
	Polymorphism : SNP, mutations, diseases
OMIM	119540;191339    [ map ]
GENECLINICS	119540;191339
SNP	UBB [dbSNP-NCBI]
SNP	NM_018955 [SNP-NCI]
SNP	UBB [GeneSNPs - Utah]  UBB] [HGBASE - SRS]
HAPMAP	UBB [HAPMAP]
HGMD	UBB
	General knowledge
Family Browser	UBB [UCSC Family Browser]
SOURCE	NM_018955
SMD	Hs.356190
SAGE	Hs.356190
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	nucleoplasm [Amigo]  nucleoplasm
GO	cytoplasm [Amigo]  cytoplasm
GO	cytosol [Amigo]  cytosol
GO	protein modification process [Amigo]  protein modification process
GO	cell cycle [Amigo]  cell cycle
GO	axon guidance [Amigo]  axon guidance
GO	protein ubiquitination [Amigo]  protein ubiquitination
GO	ER-associated protein catabolic process [Amigo]  ER-associated protein catabolic process
GO	transcription regulator activity [Amigo]  transcription regulator activity
GO	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Amigo]  anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO	long-term strengthening of neuromuscular junction [Amigo]  long-term strengthening of neuromuscular junction
GO	positive regulation of transcription [Amigo]  positive regulation of transcription
GO	regulation of synaptic plasticity [Amigo]  regulation of synaptic plasticity
GO	negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle [Amigo]  negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle
GO	positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle [Amigo]  positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle
KEGG	Parkinson's disease
PubGene	UBB
TreeFam	UBB
CTD	7314 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	UBB Related clones (RZPD - Berlin)
	PubMed
PubMed	105 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

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Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:37:08 2008