UBP1 (upstream binding protein 1 (LBP-1a))

Identity

Other names	DKFZp686L1745
	LBP-1B
	LBP-1a
	LBP1A
	LBP1B
HGNC	UBP1
Location	3p22.3
Location_base_pair	Starts at 33404832 and ends at 33456874 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	UBP1   12507
Entrez_Gene	UBP1  7342  upstream binding protein 1 (LBP-1a)
	Cards
GeneCards	UBP1
Ensembl	UBP1 [Search_View]   ENSG00000153560 [Gene_View]
Genatlas	UBP1
GeneLynx	UBP1
eGenome	UBP1
euGene	7342
	Genomic and cartography
GoldenPath	UBP1  -  3p22.3   chr3:33404832-33456874 -  3p22.3   [Description]    (hg18-March_2006)
Ensembl	UBP1 - 3p22.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	UBP1
	Gene and transcription
Genbank	AF198487 [ ENTREZ ]
Genbank	AK023274 [ ENTREZ ]
Genbank	AK023278 [ ENTREZ ]
Genbank	AK023322 [ ENTREZ ]
Genbank	AK027177 [ ENTREZ ]
RefSeq	NM_001128160 [ SRS ]    NM_001128160 [ ENTREZ ]
RefSeq	NM_001128161 [ SRS ]    NM_001128161 [ ENTREZ ]
RefSeq	NM_014517 [ SRS ]    NM_014517 [ ENTREZ ]
RefSeq	AC_000046 [ SRS ]    AC_000046 [ ENTREZ ]
RefSeq	AC_000135 [ SRS ]    AC_000135 [ ENTREZ ]
RefSeq	NC_000003 [ SRS ]    NC_000003 [ ENTREZ ]
RefSeq	NT_022517 [ SRS ]    NT_022517 [ ENTREZ ]
RefSeq	NW_001838877 [ SRS ]    NW_001838877 [ ENTREZ ]
RefSeq	NW_921651 [ SRS ]    NW_921651 [ ENTREZ ]
AceView	UBP1 AceView - NCBI
Unigene	Hs.643744 [ SRS ]    Hs.643744 [ NCBI ]     HS643744 [ spliceNest ]
Fast-db	3617 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q9NZI7 [ SRS]    Q9NZI7 [ EXPASY ]     Q9NZI7 [ INTERPRO ]     Q9NZI7 [ UNIPROT ]
Interpro	IPR007604 CP2 [ SRS ]    IPR007604 CP2 [ EBI ]
Interpro	IPR001660 SAM [ SRS ]    IPR001660 SAM [ EBI ]
CluSTr	Q9NZI7
Pfam	PF04516 CP2 [ SRS ]    PF04516 CP2 [ Sanger ]    pfam04516 [ NCBI-CDD ]
Pfam	PF00536 SAM_1 [ SRS ]    PF00536 SAM_1 [ Sanger ]    pfam00536 [ NCBI-CDD ]
Blocks	Q9NZI7
HPRD	10291
	Protein Interaction databases
DIP	Q9NZI7
IntAct	Q9NZI7
	Polymorphism : SNP, mutations, diseases
OMIM	609784    [ map ]
GENECLINICS	609784
SNP	UBP1 [dbSNP-NCBI]
SNP	NM_001128160 [SNP-NCI]
SNP	NM_001128161 [SNP-NCI]
SNP	NM_014517 [SNP-NCI]
SNP	UBP1 [GeneSNPs - Utah]  UBP1] [HGBASE - SRS]
HAPMAP	UBP1 [HAPMAP]
COSMIC	UBP1 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	UBP1
	General knowledge
Family Browser	UBP1 [UCSC Family Browser]
SOURCE	NM_001128160
SOURCE	NM_001128161
SOURCE	NM_014517
SMD	Hs.643744
SAGE	Hs.643744
GO	transcription factor activity [Amigo]  transcription factor activity
GO	transcription corepressor activity [Amigo]  transcription corepressor activity
GO	nucleus [Amigo]  nucleus
GO	regulation of transcription from RNA polymerase II promoter [Amigo]  regulation of transcription from RNA polymerase II promoter
GO	negative regulation of transcription [Amigo]  negative regulation of transcription
GO	specific transcriptional repressor activity [Amigo]  specific transcriptional repressor activity
GO	viral genome replication [Amigo]  viral genome replication
PubGene	UBP1
TreeFam	UBP1
CTD	7342 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	UBP1 Related clones (RZPD - Berlin)
	PubMed
PubMed	11 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 15:06:49 2008