VPS39 (vacuolar protein sorting 39 homolog (S. cerevisiae))

Identity

Other names	FLJ21681
	FLJ46546
	KIAA0770
	TLP
	VAM6
	hVam6p
Hugo	VPS39
Location	15q15.1
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
Hugo	VPS39
GDB	VPS39
Entrez_Gene	VPS39  23339  vacuolar protein sorting 39 homolog (S. cerevisiae)
	Cards
GeneCards	VPS39
Ensembl	VPS39 [Search_View]   ENSG00000166887 [Gene_View]
Genatlas	VPS39
GeneLynx	VPS39
eGenome	VPS39
euGene	23339
	Genomic and cartography
GoldenPath	VPS39  -  15q15.1   chr15:40238192-40287794 -  15q15.1   [Description]    (hg18-March_2006)
Ensembl	VPS39 - 15q15.1 [CytoView]
NCBI	Mapview
HomoloGene	VPS39
	Gene and transcription
Genbank	AB018313 [ ENTREZ ]
Genbank	AF280814 [ ENTREZ ]
Genbank	AF281052 [ ENTREZ ]
Genbank	AK025334 [ ENTREZ ]
Genbank	AK074193 [ ENTREZ ]
RefSeq	NM_015289 [ SRS ]    NM_015289 [ ENTREZ ]
RefSeq	AC_000058 [ SRS ]    AC_000058 [ ENTREZ ]
RefSeq	NC_000015 [ SRS ]    NC_000015 [ ENTREZ ]
RefSeq	NT_010194 [ SRS ]    NT_010194 [ ENTREZ ]
RefSeq	NW_925840 [ SRS ]    NW_925840 [ ENTREZ ]
AceView	VPS39 AceView - NCBI
Unigene	Hs.88025 [ SRS ]    Hs.88025 [ NCBI ]     HS88025 [ spliceNest ]
Fast-db	2916 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q96JC1 [ SRS]    Q96JC1 [ EXPASY ]     Q96JC1 [ INTERPRO ]
Interpro	IPR001180 Citron [ SRS ]    IPR001180 Citron [ EBI ]
CluSTr	Q96JC1
Pfam	PF00780 CNH [ SRS ]    PF00780 CNH [ Sanger ]    pfam00780 [ NCBI-CDD ]
Blocks	Q96JC1
HPRD	10300
	Protein Interaction databases
DIP	Q96JC1
IntAct	Q96JC1
	Polymorphism : SNP, mutations, diseases
SNP	VPS39 [dbSNP-NCBI]
SNP	NM_015289 [SNP-NCI]
SNP	VPS39 [GeneSNPs - Utah]  VPS39] [HGBASE - SRS]
HAPMAP	VPS39 [HAPMAP]
COSMIC	VPS39 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	VPS39
	General knowledge
Family Browser	VPS39 [UCSC Family Browser]
SOURCE	NM_015289
SMD	Hs.88025
SAGE	Hs.88025
GO	small GTPase regulator activity [Amigo]  small GTPase regulator activity
GO	cytoplasm [Amigo]  cytoplasm
GO	lysosomal membrane [Amigo]  lysosomal membrane
GO	endosome [Amigo]  endosome
GO	protein transport [Amigo]  protein transport
GO	membrane [Amigo]  membrane
GO	late endosome membrane [Amigo]  late endosome membrane
PubGene	VPS39
TreeFam	VPS39
CTD	23339 [Comparative Genomics Database]
	Other databases
	Probes
Probe	VPS39 Related clones (RZPD - Berlin)
	PubMed
PubMed	11 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Thu May 22 20:35:00 2008