VPS53 (vacuolar protein sorting 53 homolog (S. cerevisiae))

Identity

Other names	FLJ10979
	HCCS1
	MGC39512
	hVps53L
	pp13624
HGNC	VPS53
Location	17p13.3
Location_base_pair	Starts at 361480 and ends at 564846 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	VPS53   25608
Entrez_Gene	VPS53  55275  vacuolar protein sorting 53 homolog (S. cerevisiae)
	Cards
GeneCards	VPS53
Ensembl	ENSG00000141252 [Gene_View]  VPS53 [Vega]
Genatlas	VPS53
	Genomic and cartography
GoldenPath	VPS53  -  17p13.3   chr17:361480-564846 -  17p13.3   [Description]    (hg18-March_2006)
Ensembl	VPS53 - 17p13.3 [CytoView]
NCBI	Mapview
HomoloGene	VPS53
	Gene and transcription
Genbank	AF246287 [ ENTREZ ]
Genbank	AF318335 [ ENTREZ ]
Genbank	AK001841 [ ENTREZ ]
Genbank	AK091388 [ ENTREZ ]
Genbank	AK092532 [ ENTREZ ]
RefSeq	NM_001128159 [ SRS ]    NM_001128159 [ ENTREZ ]
RefSeq	NM_018289 [ SRS ]    NM_018289 [ ENTREZ ]
RefSeq	AC_000060 [ SRS ]    AC_000060 [ ENTREZ ]
RefSeq	AC_000149 [ SRS ]    AC_000149 [ ENTREZ ]
RefSeq	NC_000017 [ SRS ]    NC_000017 [ ENTREZ ]
RefSeq	NT_010718 [ SRS ]    NT_010718 [ ENTREZ ]
RefSeq	NW_001838403 [ SRS ]    NW_001838403 [ ENTREZ ]
RefSeq	NW_926584 [ SRS ]    NW_926584 [ ENTREZ ]
CCDS	VPS53 CCDS - NCBI
AceView	VPS53 AceView - NCBI
Unigene	Hs.558076 [ SRS ]    Hs.558076 [ NCBI ]
Fast-db	323 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q5VIR6 [ SRS]    Q5VIR6 [ EXPASY ]     Q5VIR6 [ INTERPRO ]     Q5VIR6 [ UNIPROT ] Q5VIR6 [ VarSplice FASTA ]
Interpro	IPR007234 Vps53_N [ SRS ]    IPR007234 Vps53_N [ EBI ]
CluSTr	Q5VIR6
Pfam	PF04100 Vps53_N [ SRS ]    PF04100 Vps53_N [ Sanger ]    pfam04100 [ NCBI-CDD ]
Blocks	Q5VIR6
HPRD	07720
	Protein Interaction databases
DIP	Q5VIR6
IntAct	Q5VIR6
	Polymorphism : SNP, mutations, diseases
SNP	VPS53 [dbSNP-NCBI]
SNP	NM_001128159 [SNP-NCI]
SNP	NM_018289 [SNP-NCI]
SNP	VPS53 [GeneSNPs - Utah]  VPS53] [HGBASE - SRS]
HAPMAP	VPS53 [HAPMAP]
HGMD	VPS53
Genetic Association	VPS53
CDC HuGE	VPS53
	General knowledge
Family Browser	VPS53 [UCSC Family Browser]
SOURCE	NM_001128159
SOURCE	NM_018289
SMD	Hs.558076
SAGE	Hs.558076
GO	endosome [Amigo]  endosome
GO	Golgi apparatus [Amigo]  Golgi apparatus
GO	endosome membrane [Amigo]  endosome membrane
GO	protein transport [Amigo]  protein transport
GO	membrane [Amigo]  membrane
PubGene	VPS53
TreeFam	VPS53
CTD	55275 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	VPS53 Related clones (RZPD - Berlin)
	PubMed
PubMed	11 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

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Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Dec 6 17:14:34 2008