YBX1 (Y box binding protein 1)

Identity

Other names	BP-8
	CSDA2
	CSDB
	DBPB
	MDR-NF1
	MGC104858
	MGC110976
	MGC117250
	NSEP-1
	NSEP1
	YB-1
	YB1
HGNC	YBX1
Location	1p34
Location_base_pair	Starts at 42920653 and ends at 42940607 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	YBX1   8014
Entrez_Gene	YBX1  4904  Y box binding protein 1
	Cards
GeneCards	YBX1
Ensembl	YBX1 [Search_View]   ENSG00000065978 [Gene_View]
Genatlas	YBX1
GeneLynx	YBX1
eGenome	YBX1
euGene	4904
	Genomic and cartography
GoldenPath	YBX1  -  1p34   chr1:42920653-42940607 +  1p34.2   [Description]    (hg18-March_2006)
Ensembl	YBX1 - 1p34.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	YBX1
	Gene and transcription
Genbank	AK309996 [ ENTREZ ]
Genbank	AK311708 [ ENTREZ ]
Genbank	BC000064 [ ENTREZ ]
Genbank	BC002411 [ ENTREZ ]
Genbank	BC010430 [ ENTREZ ]
RefSeq	NM_004559 [ SRS ]    NM_004559 [ ENTREZ ]
RefSeq	AC_000044 [ SRS ]    AC_000044 [ ENTREZ ]
RefSeq	AC_000133 [ SRS ]    AC_000133 [ ENTREZ ]
RefSeq	NC_000001 [ SRS ]    NC_000001 [ ENTREZ ]
RefSeq	NT_032977 [ SRS ]    NT_032977 [ ENTREZ ]
RefSeq	NW_001838578 [ SRS ]    NW_001838578 [ ENTREZ ]
RefSeq	NW_921351 [ SRS ]    NW_921351 [ ENTREZ ]
AceView	YBX1 AceView - NCBI
Unigene	Hs.473583 [ SRS ]    Hs.473583 [ NCBI ]     HS473583 [ spliceNest ]
Fast-db	14848 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P67809 [ SRS]    P67809 [ EXPASY ]     P67809 [ INTERPRO ]     P67809 [ UNIPROT ]
Prosite	PS00352 COLD_SHOCK [ SRS ]    PS00352 COLD_SHOCK [ Expasy ]
Interpro	IPR011129 Cold_shock_prot [ SRS ]    IPR011129 Cold_shock_prot [ EBI ]
Interpro	IPR002059 CSP_DNA_bd [ SRS ]    IPR002059 CSP_DNA_bd [ EBI ]
Interpro	IPR012340 NA-bd_OB-fold [ SRS ]    IPR012340 NA-bd_OB-fold [ EBI ]
CluSTr	P67809
Pfam	PF00313 CSD [ SRS ]    PF00313 CSD [ Sanger ]    pfam00313 [ NCBI-CDD ]
Smart	SM00357 CSP [EMBL]
Prodom	PD000621 Cold_shock[INRA-Toulouse]
Prodom	P67809 YBOX1_HUMAN [ Domain structure ]   P67809 YBOX1_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P67809
PDB	1H95 [ SRS ]    1H95 [ PdbSum ],   1H95 [ IMB ]   1H95 [ RSDB ]
HPRD	01095
	Protein Interaction databases
DIP	P67809
IntAct	P67809
	Polymorphism : SNP, mutations, diseases
OMIM	154030    [ map ]
GENECLINICS	154030
SNP	YBX1 [dbSNP-NCBI]
SNP	NM_004559 [SNP-NCI]
SNP	YBX1 [GeneSNPs - Utah]  YBX1] [HGBASE - SRS]
HAPMAP	YBX1 [HAPMAP]
HGMD	YBX1
	General knowledge
Family Browser	YBX1 [UCSC Family Browser]
SOURCE	NM_004559
SMD	Hs.473583
SAGE	Hs.473583
GO	nuclear mRNA splicing, via spliceosome [Amigo]  nuclear mRNA splicing, via spliceosome
GO	DNA binding [Amigo]  DNA binding
GO	double-stranded DNA binding [Amigo]  double-stranded DNA binding
GO	single-stranded DNA binding [Amigo]  single-stranded DNA binding
GO	transcription factor activity [Amigo]  transcription factor activity
GO	RNA binding [Amigo]  RNA binding
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	cytoplasm [Amigo]  cytoplasm
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	transcription from RNA polymerase II promoter [Amigo]  transcription from RNA polymerase II promoter
GO	RNA splicing [Amigo]  RNA splicing
GO	transcription repressor activity [Amigo]  transcription repressor activity
BIOCARTA	Transcriptional activation of dbpb from mRNA    [Genes]
PubGene	YBX1
TreeFam	YBX1
CTD	4904 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	YBX1 Related clones (RZPD - Berlin)
	PubMed
PubMed	82 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 15:08:00 2008