YY1 (YY1 transcription factor)

Identity

Other names	DELTA
	NF-E1
	UCRBP
	YIN-YANG-1
HGNC	YY1
Location	14q
Location_base_pair	Starts at 99774855 and ends at 99814557 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	YY1   12856
Entrez_Gene	YY1  7528  YY1 transcription factor
	Cards
GeneCards	YY1
Ensembl	YY1 [Search_View]   ENSG00000100811 [Gene_View]
Genatlas	YY1
GeneLynx	YY1
eGenome	YY1
euGene	7528
	Genomic and cartography
GoldenPath	YY1  -  14q   chr14:99774855-99814557 +  14q32.2   [Description]    (hg18-March_2006)
Ensembl	YY1 - 14q32.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	YY1
	Gene and transcription
Genbank	AF147416 [ ENTREZ ]
Genbank	AK025731 [ ENTREZ ]
Genbank	AK026497 [ ENTREZ ]
Genbank	BC014138 [ ENTREZ ]
Genbank	BC020324 [ ENTREZ ]
RefSeq	NM_003403 [ SRS ]    NM_003403 [ ENTREZ ]
RefSeq	AC_000057 [ SRS ]    AC_000057 [ ENTREZ ]
RefSeq	AC_000146 [ SRS ]    AC_000146 [ ENTREZ ]
RefSeq	NC_000014 [ SRS ]    NC_000014 [ ENTREZ ]
RefSeq	NT_026437 [ SRS ]    NT_026437 [ ENTREZ ]
RefSeq	NW_001838115 [ SRS ]    NW_001838115 [ ENTREZ ]
RefSeq	NW_925561 [ SRS ]    NW_925561 [ ENTREZ ]
AceView	YY1 AceView - NCBI
Unigene	Hs.388927 [ SRS ]    Hs.388927 [ NCBI ]     HS388927 [ spliceNest ]
Fast-db	5704 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P25490 [ SRS]    P25490 [ EXPASY ]     P25490 [ INTERPRO ]     P25490 [ UNIPROT ]
Prosite	PS00028 ZINC_FINGER_C2H2_1 [ SRS ]    PS00028 ZINC_FINGER_C2H2_1 [ Expasy ]
Prosite	PS50157 ZINC_FINGER_C2H2_2 [ SRS ]    PS50157 ZINC_FINGER_C2H2_2 [ Expasy ]
Interpro	IPR017114 TF_Yin_yang [ SRS ]    IPR017114 TF_Yin_yang [ EBI ]
Interpro	IPR007087 Znf_C2H2 [ SRS ]    IPR007087 Znf_C2H2 [ EBI ]
Interpro	IPR015880 Znf_C2H2-like [ SRS ]    IPR015880 Znf_C2H2-like [ EBI ]
Interpro	IPR013087 Znf_C2H2/integrase_DNA-bd [ SRS ]    IPR013087 Znf_C2H2/integrase_DNA-bd [ EBI ]
CluSTr	P25490
Pfam	PF00096 zf-C2H2 [ SRS ]    PF00096 zf-C2H2 [ Sanger ]    pfam00096 [ NCBI-CDD ]
Smart	SM00355 ZnF_C2H2 [EMBL]
Prodom	PD000003 Znf_C2H2[INRA-Toulouse]
Prodom	P25490 TYY1_HUMAN [ Domain structure ]   P25490 TYY1_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P25490
PDB	1UBD [ SRS ]    1UBD [ PdbSum ],   1UBD [ IMB ]   1UBD [ RSDB ]
PDB	1ZNM [ SRS ]    1ZNM [ PdbSum ],   1ZNM [ IMB ]   1ZNM [ RSDB ]
HPRD	02482
	Protein Interaction databases
DIP	P25490
IntAct	P25490
	Polymorphism : SNP, mutations, diseases
OMIM	600013    [ map ]
GENECLINICS	600013
SNP	YY1 [dbSNP-NCBI]
SNP	NM_003403 [SNP-NCI]
SNP	YY1 [GeneSNPs - Utah]  YY1] [HGBASE - SRS]
HAPMAP	YY1 [HAPMAP]
COSMIC	YY1 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	YY1
	General knowledge
Family Browser	YY1 [UCSC Family Browser]
SOURCE	NM_003403
SMD	Hs.388927
SAGE	Hs.388927
GO	transcription factor activity [Amigo]  transcription factor activity
GO	transcription coactivator activity [Amigo]  transcription coactivator activity
GO	transcription corepressor activity [Amigo]  transcription corepressor activity
GO	protein binding [Amigo]  protein binding
GO	intracellular [Amigo]  intracellular
GO	nucleus [Amigo]  nucleus
GO	transcription factor complex [Amigo]  transcription factor complex
GO	transcription [Amigo]  transcription
GO	regulation of transcription from RNA polymerase II promoter [Amigo]  regulation of transcription from RNA polymerase II promoter
GO	zinc ion binding [Amigo]  zinc ion binding
GO	anterior/posterior pattern formation [Amigo]  anterior/posterior pattern formation
GO	nuclear matrix [Amigo]  nuclear matrix
GO	PcG protein complex [Amigo]  PcG protein complex
GO	metal ion binding [Amigo]  metal ion binding
GO	camera-type eye morphogenesis [Amigo]  camera-type eye morphogenesis
BIOCARTA	The PRC2 Complex Sets Long-term Gene Silencing Through Modification of Histone Tails    [Genes]
PubGene	YY1
TreeFam	YY1
CTD	7528 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	YY1 Related clones (RZPD - Berlin)
	PubMed
PubMed	83 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 15:08:06 2008