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GDF15 (growth differentiation factor 15)

Identity

Other namesMIC-1 (macrophage inhibitory cytokine-1)
NAG-1
NRG-1
PDF (prostate derived factor)
PLAB
PTGF-β
PTGFB
HGNC GDF15
Location 19p13.11

DNA/RNA

Note In the genome, the GDF15 gene is localized on chromosome 19 in the region p13.1-13.2. The macrophage inhibitory cytokine (MIC-1) DNA sequence is 2,746 bp long and consists of two exons separated by an intron. A conserved TATA-like motif (TATAAA) is present nearer to the start codon.
 
  Shows the genomic organization of GDF15 gene.
Transcription The expression of GDF15/MIC-1 is upregulated by IL1β, TNFa, IL2, MCSF, TGFβ and p53. Androgen also regulates the expression of GDF15/MIC-1 in vitro and in vivo. In prostate cancer cells, calcitriol induces GDF15/MIC-1 expression. Furthermore, it has been shown that the basal transcription of MIC-1 gene is regulated by Sp1 and Sp3.

Protein

 
  Shows the structural organization and processing of GDF15 protein. RXXR-motif for cleavage; N, amino-terminal region; C, cysteine.
Description The premature GDF/PDF/MIC-1 protein consists of 308 amino acids that contain a 29 amino acid signal peptide, a 167 amino acid propeptide, and a 112 amino acid mature protein. The mature protein is secreted as a homodimer linked by disulfide bonds and is released from the propeptide following intracellular cleavage at RXXR furine-like cleavage site. The mature peptide of GDF-1/MIC-1 contains two additional cysteine residues in addition to the seven conserved cysteines necessary for the cysteine knot, a structural hallmark of this TGF-β superfamily. The exact function of these two additional cysteine residues is still unknown. The propeptide has a consensus N-linked glycosylation site in it. Unlike all other TGF-β superfamily members, MIC-1 mature peptide can be correctly folded and secreted without a propeptide. The propeptide plays a novel role in proteosomal targeting of the monomeric precursor and ensures that only dimeric precursor exists in the endoplasmic reticulum.
Expression GDF15/PDF/MIC-1 is expressed at high levels in placenta, adult prostate, skin and at a low level in several other tissues including colon, kidney and fetal brain.
Localisation MIC-1 is an extracelluarly localized secretory protein.
Function GDF15/MIC-1 plays diverse biological functions in varied cellular context. It has been proposed that GDF15/MIC-1 can regulate the late phase macrophage activation by inhibiting TNF-a as an autocrine/paracrine regulatory molecule. Its role in the early stages of endochondrial bone formation, hematopoietic development, embryonic implantation and placental function has been reported. Animal studies have shown the role of GDF15/MIC-1 as a central regulator of appetite and body weight. For midbrain dopaminergic neurons, GDF15/MIC-1 acts as a both neurotrophic and neuroprotective factor, in vitro and in vivo. A role of GDF15/MIC-1 in cancer progression has also been reported by impacting on cell signaling.
Homology It shares a significant homology with the GDF15 gene of Pan troglodytes, Bos Taurus and Canis lupus familiaris. In addition, it is also similar to Gdf15 gene of Mus musculus and Rattus norvegicus.

Implicated in

Entity Various Cancers
Disease GDF15/MIC-1 over expression is associated with different cancers, including gastric, pancreatic, prostate and colorectal cancer. It has been shown that measurement of serum GDF15/MIC-1 level aids in the diagnosis of prostrate and pancreatic cancer.
Prognosis Recently, a direct association of elevated serum GDF15/MIC-1 and metastatic prostrate, colorectal, and breast cancer has been reported. Additionally, higher serum GDF15/MIC-1 level was correlated with higher incidence of lymph node metastasis and shorter relapse and shorter overall survival period.
Oncogenesis The oncogenic property of GDF15/MIC-1 in different cancer has been reported. In prostrate cancer, it promotes AR-positive prostrate cancer cell proliferation trough the activation of ERK1 / ERK2 signal pathway. Additionally, GDF15 promotes the drug resistance property of prostrate cancer cells. The role of GDF15/MIC-1 in promoting the invasive property of gastric cancer cells has been reported. This may be due to GDF15/MIC-1 mediated up-regulation of Urokinase-type plasminogen activator system. In contrast, some studies have reported an antitumorigenic role of GDF15/MIC-1 in colon, breast and glioblastoma cell lines. Most of these reports suggest a role of GDF15/MIC-1 in the induction of apoptosis via both p53-dependent and independent mechanisms.
  
Entity Thalassemia
Disease Expanded erythroid compartment secrete high level of GDF15, which leads to iron overload in thalassemia syndromes by inhibiting hepcidin expression.
  

External links

Nomenclature
HGNCGDF15   30142
Entrez_GeneGDF15  9518  growth differentiation factor 15
Cards
AtlasGDF15ID40701ch19p13
GeneCardsGDF15
EnsemblGDF15 [Search_View]   ENSG00000130513 [Gene_View]
GenatlasGDF15
GeneLynxGDF15
eGenomeGDF15
euGene9518
Genomic and cartography
GoldenPathGDF15  -  19p13.11   chr19:18357968-18360986 +  19p13.11   [Description]    (hg18-Mar_2006)
EnsemblGDF15 - 19p13.11 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneGDF15
Gene and transcription
GenbankAB000584 [ ENTREZ ]
GenbankAF003934 [ ENTREZ ]
GenbankAF019770 [ ENTREZ ]
GenbankAF173860 [ ENTREZ ]
GenbankAK225431 [ ENTREZ ]
RefSeqNM_004864 [ SRS ]    NM_004864 [ ENTREZ ]
RefSeqAC_000062 [ SRS ]    AC_000062 [ ENTREZ ]
RefSeqAC_000151 [ SRS ]    AC_000151 [ ENTREZ ]
RefSeqNC_000019 [ SRS ]    NC_000019 [ ENTREZ ]
RefSeqNT_011295 [ SRS ]    NT_011295 [ ENTREZ ]
RefSeqNW_001838484 [ SRS ]    NW_001838484 [ ENTREZ ]
RefSeqNW_927195 [ SRS ]    NW_927195 [ ENTREZ ]
AceViewGDF15 AceView - NCBI
UnigeneHs.616962 [ SRS ]    Hs.616962 [ NCBI ]     HS616962 [ spliceNest ]
Fast-db9066 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ99988 [ SRS]    Q99988 [ EXPASY ]     Q99988 [ INTERPRO ]     Q99988 [ UNIPROT ]
PrositePS00250 TGF_BETA_1 [ SRS ]    PS00250 TGF_BETA_1 [ Expasy ]
PrositePS51362 TGF_BETA_2 [ SRS ]    PS51362 TGF_BETA_2 [ Expasy ]
InterproIPR002400 GF_cysknot [ SRS ]    IPR002400 GF_cysknot [ EBI ]
InterproIPR001839 TGFb [ SRS ]    IPR001839 TGFb [ EBI ]
InterproIPR015615 TGFbeta [ SRS ]    IPR015615 TGFbeta [ EBI ]
CluSTrQ99988
PfamPF00019 TGF_beta [ SRS ]    PF00019 TGF_beta [ Sanger ]    pfam00019 [ NCBI-CDD ]
SmartSM00204 TGFB [EMBL]
ProdomPD000357 TGFb[INRA-Toulouse]
ProdomQ99988 GDF15_HUMAN [ Domain structure ]   Q99988 GDF15_HUMAN  [ sequences sharing at least 1 domain ]
BlocksQ99988
HPRD05608
Protein Interaction databases
DIPQ99988
IntActQ99988
Polymorphism : SNP, mutations, diseases
OMIM605312    [ map ]   
GENECLINICS605312
SNPGDF15 [dbSNP-NCBI]  
SNPNM_004864 [SNP-NCI]  
SNPGDF15 [GeneSNPs - Utah]  GDF15] [HGBASE - SRS]
HAPMAPGDF15 [HAPMAP]  
COSMICGDF15 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDGDF15
General knowledge
Family BrowserGDF15 [UCSC Family Browser]
SOURCENM_004864
SMDHs.616962
SAGEHs.616962
GOcytokine activity [Amigo]  cytokine activity
GOextracellular region [Amigo]  extracellular region
GOextracellular space [Amigo]  extracellular space
GOsignal transduction [Amigo]  signal transduction
GOtransforming growth factor beta receptor signaling pathway [Amigo]  transforming growth factor beta receptor signaling pathway
GOcell-cell signaling [Amigo]  cell-cell signaling
GOgrowth factor activity [Amigo]  growth factor activity
PubGeneGDF15
TreeFamGDF15
CTD9518 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeGDF15 Related clones (RZPD - Berlin)
PubMed
PubMed56 Pubmed reference(s) in LocusLink

Bibliography

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PMID 9593718
 
Characterization of the rat, mouse, and human genes of growth/differentiation factor-15/macrophage inhibiting cytokine-1 (GDF-15/MIC-1).
Bottner M, Laaff M, Schechinger B, Rappold G, Unsicker K, Suter-Crazzolara C.
Gene. 1999 Sep 3; 237(1): 105-11.
PMID 10524241
 
The propeptide of macrophage inhibitory cytokine (MIC-1), a TGF-beta superfamily member, acts as a quality control determinant for correctly folded MIC-1.
Bauskin AR, Zhang HP, Fairlie WD, He XY, Russell PK, Moore AG, Brown DA, Stanley KK, Breit SN.
EMBO J. 2000 May 15; 19(10): 2212-20.
PMID 10811612
 
The transforming growth factor-ss superfamily cytokine macrophage inhibitory cytokine-1 is present in high concentrations in the serum of pregnant women.
Moore AG, Brown DA, Fairlie WD, Bauskin AR, Brown PK, Munier ML, Russell PK, Salamonsen LA, Wallace EM, Breit SN.
J Clin Endocrinol Metab. 2000 Dec; 85(12): 4781-8.
PMID 11134143
 
Molecular cloning and characterization of human nonsteroidal anti-inflammatory drug-activated gene promoter. Basal transcription is mediated by Sp1 and Sp3.
Baek SJ, Horowitz JM, Eling TE.
J Biol Chem. 2001 Sep 7; 276(36): 33384-92.
PMID 11445565
 
Anoxia induces macrophage inhibitory cytokine-1 (MIC-1) in glioblastoma cells independently of p53 and HIF-1.
Albertoni M, shaw PH, Nozaki M, Godard S, Tenan M, Hamou MF, Fairlie DW, Breit SN, Paralkar VM, de Tribolet N, Van Meir EG, Hegi ME.
Oncogene. 2002 Jun 20; 21(27): 4212-9.
PMID 12082608
 
Autocrine human growth hormone inhibits placental transforming growth factor-beta gene transcription to prevent apoptosis and allow cell cycle progression of human mammary carcinoma cells.
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J Biol Chem. 2002 Jul 19; 277(29): 26662-72.
PMID 11994274
 
Expression profile of differentially-regulated genes during progression of androgen-independent growth in human prostrate cancer cells.
Karan D, Kelly DL, Rizzino A, Lin MF, Batra SK.
Carcinogenesis. 2002 Jun; 23(6): 967-75.
PMID 12082018
 
Dysregulated expression of MIC-1/PDF in human prostrate tumor cells.
Karan D, Chen SJ, Johansson SL, Singh AP, Paralkar VM, Lin MF, Batra SK.
Biochem Biophys Res Commun. 2003 Jun 6; 305(3): 598-604.
PMID 12763036
 
Macrophage inhibitory cytokine-1 induces the invasiveness of gastric cancer cells by up-regulating the urokinase-type plasminogen activator system.
Lee DH, Yang Y, Lee SJ, Kim KY, Koo TH, Shin SM, Song KS, Lee YH, Kim YJ, Lee JJ, Choi I, Lee JH.
Cancer Res. 2003 Aug 1; 63 (15): 4648-55.
PMID 12907645
 
Role of macrophage inhibitory cytokine-1 in tumorigenesis and diagnosis of cancer.
Bauskin AR, Brown DA, Kuffner T, Johnen H, Luo XW, Hunter M, Breit SN.
Cancer Res. 2006 May 15; 66(10): 4983-6.
PMID 16707416
 
Prostate-derived factor as a paracrine and autocrine factor for the proliferation of androgenreceptor-positive human prostate cancer cells.
Chen SJ, Karan D, Johansson SL, Lin FF, Zeckser J, Singh AP, Batra SK, Lin MF.
Prostate. 2007 Apr 1; 67(5): 557-71
PMID 17221842
 
High levels of GDF15 in thalassemia suppress expression of the iron regulatory protein hepcidin.
Tanno T, Bhanu NV, Oneal PA, Goh SH, Staker P, Lee YT, Moroney JW, Reed CH, Luban NL, Wang RH, Eling TE, Childs R, Ganz T, Leitman SF, Fucharoen S, Miller JL.
Nat Med. Sep; 13(9): 1096-101.
PMID 17721544
 
Molecular alterations in prostrate carcinomas that associate with in vivo exposure to chemotherapy identification of a cytoprotective mechanism involving growth differentiation factor 15.
Huang CY, Beer TM, Higano CS, True LD, Vessella R, Lange PH, Garzotto M, Nelson PS.
Clin Cancer Res. 2007 Oct 1; 13(19): 5825-33.
PMID 17908975
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written04-2008Shantibhusan Senapati, Ajay P Singh, Surinder K Batra
Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, 985870 Nebraska Medical Center, Durham Research center 7005, Omaha, NE 68198-5870, USA

Citation

This paper should be referenced as such :
Senapati S, Singh AP, Batra SK . GDF15 (growth differentiation factor 15). Atlas Genet Cytogenet Oncol Haematol. April 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/GDF15ID40701ch19p13.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 11 21:14:07 2008


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