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CCDC6 coiled-coil domain containing 6

Identity

Other namesD10S170
H4
TST1
HGNC (Hugo) CCDC6
Location 10q21.2

DNA/RNA

Description At least 8 exons spanning >76kb (gene incompletely characterized).
Pseudogene None reported

Protein

Description 585 amino acid leucine zipper protein
Expression Widely expressed
Function Unknown
Homology Weak but significant homology to the myosin superfamily

Implicated in

Entity Papillary thyroid carcinoma
Cytogenetics inv(10)(q11.2q21)
Hybrid/Mutated Gene H4-RET (also known as PTC1)
Abnormal Protein Contains the leucine zipper of H4 and the entire tyrosine kinase domain of RET. The fusion is a constitutively active tyrosine kinase.
Oncogenesis In transgenic mice the fusion gave rise to mammary adenocarcinomas and, less frequently, hyperplasia of sebaceous glands and rare benign skin tumors.
  
Entity negative chronic myeloid leukaemia / chronic myelomonocytic leukemia
Prognosis Too few cases reported but likely to be similar to CML
Cytogenetics t(5;10)(q33;q21.2)
Hybrid/Mutated Gene H4-PDGFRB. In a single case analyzed the translocation was found to be complex at the molecular level.
Abnormal Protein Contains the leucine zipper of H4 and the entire tyrosine kinase domain and transmembrane domain of PDGFRB
  

Breakpoints

 

External links

Nomenclature
HGNC (Hugo)CCDC6   18782
Entrez_Gene (NCBI)CCDC6  8030  coiled-coil domain containing 6
Cards
AtlasH4ID280
GeneCards (Weizmann)CCDC6
Ensembl (Hinxton)ENSG00000108091 [Gene_View]  CCDC6 [Vega]
AceView (NCBI)CCDC6
Genatlas (Paris)CCDC6
euGene (Indiana)8030
SOURCE (Stanford)NM_005436
Gene Expression (Array Express) ENSG00000108091
Genomic and cartography
GoldenPath (UCSC)CCDC6  -  10q21.2
EnsemblCCDC6 - [CytoView]
Mapping of homologs : NCBICCDC6 [Mapview]
OMIM188550   601985   
Gene and transcription
Gene : Genbank (Entrez)AA112388 AK024913 AK055515 AK056848 AK292593
Reference sequence (RefSeq transcript) :SRSNM_005436
Reference transcript : EntrezNM_005436
RefSeq genomic : SRSAC_000053 AC_000142 NC_000010 NT_030059 NW_001837986 NW_924796
RefSeq genomic : EntrezAC_000053 AC_000142 NC_000010 NT_030059 NW_001837986 NW_924796
Consensus coding sequences : CCDS NCBICCDC6
Cluster EST : UnigeneHs.591360 [ SRS ] Hs.591360 [ NCBI ]
Alternative Splicing : Fast-db (Paris)10886
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ16204 (SRS) Q16204 (Expasy) Q16204 (Uniprot)
With graphics : InterProQ16204
Splice isoforms : VarSplice FASTAQ16204(VarSplice FASTA)
Domains : Interpro (SRS)DUF2046   
Domains : Interpro (EBI)DUF2046   
Related proteins : CluSTrQ16204
Domain families : Pfam SRSDUF2046 (PF09755)   
Domain families : Pfam SangerDUF2046 (PF09755)   
Domain families : Pfam NCBIpfam09755   
Blocks (Seattle)Q16204
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
Human Protein AtlasENSG00000108091
HPRD09064
Protein Interaction databases
DIP (DOE-UCLA)Q16204
IntAct (EBI)Q16204
FunCoupENSG00000108091
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBICCDC6
SNP : GeneSNP UtahCCDC6
SNP : HGBaseCCDC6
Genetic variants : HAPMAPCCDC6
Somatic Mutations in Cancer : COSMICCCDC6 
Translocation Breakpoints in Cancer : TICdbCCDC6 
Mutations and Diseases : HGMDCCDC6
Hereditary diseases : OMIM188550    601985   
Hereditary diseases : GENETests188550    601985   
Diseases : Genetic AssociationCCDC6
General knowledge
Homologs : HomoloGeneCCDC6
Homology/Alignments : Family Browser UCSCCCDC6
Phylogenetic Trees/Animal Genes : TreeFamCCDC6
Chemical/Protein Interactions : CTD8030
Keywords Ontology : AmiGOstructural constituent of cytoskeleton  protein binding  cytoplasm  cytoskeleton  biological_process  SH3 domain binding  
Keywords Ontology : EGO-EBIstructural constituent of cytoskeleton  protein binding  cytoplasm  cytoskeleton  biological_process  SH3 domain binding  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probe
Probes : ImagenesCCDC6 Related clones (RZPD - Berlin)
Literature
PubMed26 Pubmed reference(s) in Entrez
PubGeneCCDC6

Bibliography

Characterization of an inversion on the long arm of chromosome 10 juxtaposing D10S170 and RET and creating the oncogenic sequence RET/PTC.
Pierotti MA, Santoro M, Jenkins RB, Sozzi G, Bongarzone I, Grieco M, Monzini N, Miozzo M, Herrmann MA, Fusco A
Proceedings of the National Academy of Sciences of the United States of America. 1992 ; 89 (5) : 1616-1620.
PMID 1542652
 
Cloning and characterization of H4 (D10S170), a gene involved in RET rearrangements in vivo.
Grieco M, Cerrato A, Santoro M, Fusco A, Melillo RM, Vecchio G
Oncogene. 1994 ; 9 (9) : 2531-2535.
PMID 8058316
 
Development of mammary and cutaneous gland tumors in transgenic mice carrying the RET/PTC1 oncogene.
Portella G, Salvatore D, Botti G, Cerrato A, Zhang L, Mineo A, Chiappetta G, Santelli G, Pozzi L, Vecchio G, Fusco A, Santoro M
Oncogene. 1996 ; 13 (9) : 2021-2026.
PMID 8934550
 
Leucine zipper-mediated dimerization is essential for the PTC1 oncogenic activity.
Tong Q, Xing S, Jhiang SM
The Journal of biological chemistry. 1997 ; 272 (14) : 9043-9047.
PMID 9083029
 
Fusion of H4/D10S170 to the platelet-derived growth factor receptor beta in BCR-ABL-negative myeloproliferative disorders with a t(5;10)(q33;q21).
Kulkarni S, Heath C, Parker S, Chase A, Iqbal S, Pocock CF, Kaeda J, Cwynarski K, Goldman JM, Cross NC
Cancer research. 2000 ; 60 (13) : 3592-3598.
PMID 10910073
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written06-2001Nick.C P Cross

Citation

This paper should be referenced as such :
Cross NCP . CCDC6 coiled-coil domain containing 6. Atlas Genet Cytogenet Oncol Haematol. June 2001 .
URL : http://AtlasGeneticsOncology.org/Genes/H4ID280.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 31 20:10:10 CEST 2010

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