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IL1B (interleukin 1, beta)

Identity

Other namesCatabolin
IL-1
IL-1B
IL1-BETA
IL1F2
pro-interleukin-1-beta
HGNC IL1B
Location 2q13
Location_base_pair Starts at 113303808 and ends at 113310827 bp from pter ( according to hg18-Mar_2006).
Note IL-1beta is a pro-inflamatory cytokine and is expressed by many cells including macrophage, NK cells, monocytes, and neutrophils. It belongs to the IL-1 family cluster that includes the IL-1a, and IL1-RN genes. The caspase 1 ( CASP1/ICE ) gene proteolitically activates IL-1β. This gene is involved in the proliferation, differentiation and apoptosis of cells. Inflammatory hypersensitivity has been found to be the result of IL-1β activation of cyclooxygenase-2 ( PTGS2/COX2 ). IL-1beta has also been associated with septic shock, and wound healing.

DNA/RNA

Note IL-1beta is located on Chromosome 2 at location 113,303,808-113,310,827. It is located in the middle of IL-1a and IL1-RN between 40 and 110kb from IL-1a. The pro IL-1β gene is composed of seven exons with a primary transcription product length of 7,008 nucleotides.
Description The gene spans a region of 7.5 kb and the coding part is divided into seven exons.
Transcription Transcript length: 1,498 bps; Translation length: 269 residues.

Protein

Description 269 amino acids.
Function IL-1 proteins are considered endogenous pyrogens since they are involved in inflammatory responses and also have been observed to foment prostaglandin and collagenase release from synovial cells. Additionally, IL-1 is responsible for the induction of IL-2 release, B-cell maturation/proliferation, and fibroblast growth factor activity, that stimulates thymocyte proliferation.
Homology IL-1beta shares sequence homology with IL-1a and IL1-RN. IL-1beta and IL-1a have an amino acid homology between them of approximately 25% .

Implicated in

Entity Gastric Cancer
Note Interleukin-1 beta overexpression is associated with the increased risk of both hypochlorhydria induced by H. pylori and gastric cancer (El-Omar et al., 2000). Enhancement of IL-1beta production was determined to be caused by polymorphisms in the interleukin-1 gene cluster. The pro-inflammatory properties of the IL-1 beta cytokine could explain the association with gastric cancer, also considering it is an important inhibitor of acid secretion.
  
Entity Growth of estrogen-dependent tumors
Oncogenesis In the pathogenesis of estrogen-dependent cancers, particularly, breast and ovary, the role of IL-1β is implicated in protumorigenic insults, cell proliferation, angiogenesis and cell adhesion. It appears that it is the concentration of the peptide interleukin-1 beta which determines its stimulatory or inhibitory paracrine and/or autocrine signals that regulate the growth of estrogen-dependent tumors. The IL-1β over expressing stable MCF7 cell secreting high level of IL-1β peptides shows inhibition of cell growth compared to nontransfected cells, and elevated level of p53 protein is detected in these cells (Roy et al., 2006). Stably IL-1beta transfected cells secreting moderate level of IL-1β peptides stimulate the clonal expansion of MCF7 cells. Different cellular signaling may operate in response to varying levels of IL-1β leading to genotoxic damage, cell apoptosis or cell growth .
  
Entity Tumorigenesis
Oncogenesis Il-1 beta has also been found to stimulate the local production of chemotactic factors for polymorphonuclear leukocytes (PMN's) in tumors; PMN's may play an important role in the inhibition of tumor growth.
On the other hand, other studies have found IL-1 beta to promote tumor growth. According to Vidal-Vanaclocha et al. (2000), IL-1 beta along with tumor necrosis factor-alpha (TNF-alpha), up-regulate the expression of vascular cell adhesion molecule-1 ( VCAM-1 ) on hepatic sinusoidal endothelium (HSE) in vivo which promotes cancer cell adhesion and liver metastases.
  
Entity Cardiovascular Risk, Cardiovascular Diseases
Note Increased Cardiovascular Risk, Cardiovascular Diseases
Prognosis SNPs in the interleukin-1beta gene has been reported to be associated with lower expression of basal CRP, a heritable acute-phase plasma protein, in healthy individuals. Elevated basal CRP has been associated with increased cardiovascular risk.
Additionally, an inflammatory cascade involving TNF, IL-1 beta and IL-6 has been suggested to play an important role in the pathogenesis of common postoperative problems associated with cardiac surgery involving a cardiopulmonary bypass. Increased levels of IL-6 release were associated with higher serum levels of TNF-a and IL-1β after surgery, in patients undergoing coronary artery bypass grafting (CABG) with cardiopulmonary bypass (CPB).
  
Entity Liver surgery
Note Changes in tumor necrosis factor-a and interleukin-1 beta production following liver surgery.
Oncogenesis For cirrhotic patients undergoing liver surgery, changes of IL-1B and tumor necrosis factor-a levels are observed, suggesting that these two genes play an important role in the pathogenesis of postoperative liver failures. Important tissue injury and/or endotoxin, organ failures could develop and progress after stimulation of cytokine production in monocytes by factors such as insufficient blood supply (ischemia).
  
Entity Inflammation
Prognosis IL-1 beta gene might be an important neuroregulator of responses to inflammatory stressors in the central nervous system considering that overexpression of the IL-1 beta gene has been found in the CNS during systemic inflammation. IL-1a and IL-1b induction in the hypothalamus may regulate neuroendocrine functions during infection and inflammation. Wong et al (1997) propose that actions of brain IL-1 beta during systemic inflammation are an indicator of limited gene expression of cytokines in the brain to counteract IL-1 bioactivity.
  
Entity Rheumatoid Arthritis, Osteoarthritis
Prognosis IL-1 Beta activity has been linked to a TNF-alpha/cAMP pathway involved in rheumatoid arthritis. Synergistic up-regulation in IL-1 beta synthesis by TNF-alpha/cAMP has been proposed to play a role in the permanent IL-1 beta levels continuously present in chronically inflamed joints. IL-1 beta production is regulated by the TNF-alpha/cAMP pathway at the transcription level requiring a cAMP response element located between -2762 and -2755 bp in the upstream regulatory sequence of IL-1 beta.
  
Entity Periodontal Disease
Prognosis The severity of periodontal disease could be evaluated through IL-1 beta activity. Liu et al. (1996) identified IL-1beta as playing a pivotal role in the pathogenic mechanism of periodontal tissue destruction. According to the authors, clinical parameters such as gingival index (GI), probing depth (PD) and GCF flow were significantly correlated with gingival crevicular fluid (GCF) and tissue IL-1beta activity. Moreover, the degree of inflammation within periodontal disease tissue could be measured IL-1beta activity in GCF or diseased tissues based on the classification of clinical parameters.
An additional study corroborated above mentioned finding of IL-1 beta levels as a biomarker of periodontal disease. Elevated salivary levels of MMP-8 or IL-1beta or both combined, were found to significantly increase the risk of periodontal disease. Salivary levels of MMP-8 and IL-1beta could serve as biomarkers of periodontitis.
  
Entity Erosive hand osteoarthritis (OA)
Note There is a significant association between the genomic region containing the IL1B 5810 SNP and erosive hand OA in a group of US Caucasoid population (Stern et al., 2003). The IL1B 5810 AA genotype was significantly associated with the erosive hand OA subgroup (relative risk 3.8, p=0.007). The same genotype association was found significant between erosive and non-erosive hand OA subjects (relative risk 4.01, p=0.008). The IL1B 5810A allele occurs most frequently on haplotypes with the SNP alleles IL1B 1423C, IL1B 1903T, IL1B 5887C, and IL1A (-)889C.
  

External links

Nomenclature
HGNCIL1B   5992
Entrez_GeneIL1B  3553  interleukin 1, beta
Cards
AtlasIL1BID40950ch2q13
GeneCardsIL1B
EnsemblENSG00000125538 [Gene_View]  IL1B [Vega]
GenatlasIL1B
Genomic and cartography
GoldenPathIL1B  -  2q13   chr2:113303808-113310827 -  2q14   [Description]    (hg18-Mar_2006)
EnsemblIL1B - 2q14 [CytoView]
NCBIMapview
OMIM137215 Disease map [OMIM]
OMIM147720 Disease map [OMIM]
HomoloGeneIL1B
Gene and transcription
GenbankAF043335 [ ENTREZ ]
GenbankAK313983 [ ENTREZ ]
GenbankBC008678 [ ENTREZ ]
GenbankBT007213 [ ENTREZ ]
GenbankCR407679 [ ENTREZ ]
RefSeqNM_000576 [ SRS ]    NM_000576 [ ENTREZ ]
RefSeqAC_000045 [ SRS ]    AC_000045 [ ENTREZ ]
RefSeqAC_000134 [ SRS ]    AC_000134 [ ENTREZ ]
RefSeqNC_000002 [ SRS ]    NC_000002 [ ENTREZ ]
RefSeqNT_022135 [ SRS ]    NT_022135 [ ENTREZ ]
RefSeqNW_001838841 [ SRS ]    NW_001838841 [ ENTREZ ]
RefSeqNW_921474 [ SRS ]    NW_921474 [ ENTREZ ]
CCDSIL1B CCDS - NCBI
AceViewIL1B AceView - NCBI
UnigeneHs.126256 [ SRS ]    Hs.126256 [ NCBI ]
Fast-db9780 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtO43645 [ SRS]    O43645 [ EXPASY ]     O43645 [ INTERPRO ]     O43645 [ UNIPROT ] O43645 [ VarSplice FASTA ]
PrositePS00253 INTERLEUKIN_1 [ SRS ]    PS00253 INTERLEUKIN_1 [ Expasy ]
InterproIPR002348 IL1_HBGF [ SRS ]    IPR002348 IL1_HBGF [ EBI ]
InterproIPR000975 Interleukin_1 [ SRS ]    IPR000975 Interleukin_1 [ EBI ]
InterproIPR003294 InterleukinIL1AB [ SRS ]    IPR003294 InterleukinIL1AB [ EBI ]
InterproIPR003296 InterleukinIL1B [ SRS ]    IPR003296 InterleukinIL1B [ EBI ]
CluSTrO43645
PfamPF00340 IL1 [ SRS ]    PF00340 IL1 [ Sanger ]    pfam00340 [ NCBI-CDD ]
SmartSM00125 IL1 [EMBL]
ProdomPD002536 Interleukin_1[INRA-Toulouse]
ProdomO43645 O43645_HUMAN [ Domain structure ]   O43645 O43645_HUMAN  [ sequences sharing at least 1 domain ]
BlocksO43645
HPRD00985
Protein Interaction databases
DIPO43645
IntActO43645
Polymorphism : SNP, mutations, diseases
OMIM137215    [ map ]   
OMIM147720    [ map ]   
GENETests137215
GENETests147720
SNPIL1B [dbSNP-NCBI]  
SNPNM_000576 [SNP-NCI]  
SNPIL1B [GeneSNPs - Utah]  IL1B] [HGBASE - SRS]
HAPMAPIL1B [HAPMAP]  
HGMDIL1B
Genetic AssociationIL1B
CDC HuGEIL1B
General knowledge
Family BrowserIL1B [UCSC Family Browser]
SOURCENM_000576
SMDHs.126256
SAGEHs.126256
GOactivation of MAPK activity [Amigo]  activation of MAPK activity
GOangiogenesis [Amigo]  angiogenesis
GOfever [Amigo]  fever
GOpositive regulation of protein amino acid phosphorylation [Amigo]  positive regulation of protein amino acid phosphorylation
GOsignal transducer activity [Amigo]  signal transducer activity
GOinterleukin-1 receptor binding [Amigo]  interleukin-1 receptor binding
GOprotein binding [Amigo]  protein binding
GOextracellular region [Amigo]  extracellular region
GOextracellular space [Amigo]  extracellular space
GOapoptosis [Amigo]  apoptosis
GOanti-apoptosis [Amigo]  anti-apoptosis
GOinflammatory response [Amigo]  inflammatory response
GOimmune response [Amigo]  immune response
GOsignal transduction [Amigo]  signal transduction
GOelevation of cytosolic calcium ion concentration [Amigo]  elevation of cytosolic calcium ion concentration
GOcell-cell signaling [Amigo]  cell-cell signaling
GOnegative regulation of cell proliferation [Amigo]  negative regulation of cell proliferation
GOcytokine and chemokine mediated signaling pathway [Amigo]  cytokine and chemokine mediated signaling pathway
GOneutrophil chemotaxis [Amigo]  neutrophil chemotaxis
GOpositive regulation of interleukin-6 production [Amigo]  positive regulation of interleukin-6 production
GOpositive regulation of I-kappaB kinase/NF-kappaB cascade [Amigo]  positive regulation of I-kappaB kinase/NF-kappaB cascade
GOpositive regulation of chemokine biosynthetic process [Amigo]  positive regulation of chemokine biosynthetic process
GOpositive regulation of interleukin-6 biosynthetic process [Amigo]  positive regulation of interleukin-6 biosynthetic process
GOpositive regulation of JNK cascade [Amigo]  positive regulation of JNK cascade
GOleukocyte migration [Amigo]  leukocyte migration
GOpositive regulation of transcription factor activity [Amigo]  positive regulation of transcription factor activity
BIOCARTASignal transduction through IL1R    [Genes]
BIOCARTAIL 5 Signaling Pathway    [Genes]
BIOCARTAMsp/Ron Receptor Signaling Pathway    [Genes]
BIOCARTANFkB activation by Nontypeable Hemophilus influenzae    [Genes]
KEGGMAPK signaling pathway
KEGGCytokine-cytokine receptor interaction
KEGGApoptosis
KEGGToll-like receptor signaling pathway
KEGGHematopoietic cell lineage
KEGGType I diabetes mellitus
PubGeneIL1B
TreeFamIL1B
CTD3553 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeIL1B Related clones (RZPD - Berlin)
PubMed
PubMed499 Pubmed reference(s) in Entrez

Bibliography

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A cyclic adenosine 3',5'-monophosphate signal is required for the induction of IL-1 beta by TNF-alpha in human monocytes.
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Relationships between clinical parameters, Interleukin 1B and histopathologic findings of gingival tissue in periodontitis patients.
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PMID 8777275
 
Changes in tumor necrosis factor-a and interleukin-1 beta production following liver surgery on cirrhotic patients.
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Interleukin (IL) 1beta, IL-1 receptor antagonist, IL-10, and IL-13 gene expression in the central nervous system and anterior pituitary during systemic inflammation: pathophysiological implications.
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Interleukin-1 polymorphisms associated with increased risk of gastric cancer.
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PMID 10746728
 
IL-18 regulates IL-1beta-dependent hepatic melanoma metastasis via vascular cell adhesion molecule-1.
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PMID 10639148
 
Inter-individual differences in cytokine release in patients undergoing cardiac surgery with cardiopulmonary bypass.
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Association of erosive hand osteoarthritis with a single nucleotide polymorphism on the gene encoding interleukin-1 beta.
Stern AG, de Carvalho MR, Buck GA, Adler RA, Rao TP, Disler D, Moxley G; I-NODAL Network.
Osteoarthritis Cartilage. 2003 Jun;11(6):394-402.
PMID 12801479
 
Salivary biomarkers of existing periodontal disease: a cross-sectional study.
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J Am Dent Assoc. 2006 Mar;137(3):322-9.
PMID 16570465
 
Levels of IL-1 beta control stimulatory/inhibitory growth of cancer cells.
Roy D, Sarkar S, Felty Q.
Front Biosci. 2006 Jan 1;11:889-98.
PMID 16146780
 
Quantification of the Genetic Component of Basal C-Reactive Protein Expression in SLE Nuclear Families.
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Ann Hum Genet. 2008 Mar 27. [Epub ahead of print]
PMID 18373721
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-2008Sandra Giraldo, Jesus Sanchez, Quentin Felty, Deodutta Roy
Department of Environmental and Occupational Health, Robert Stempel School of Public Health, Florida International University, Miami, FL 33199, USA

Citation

This paper should be referenced as such :
Giraldo S, Sanchez J, Felty Q, Roy D . IL1B (interleukin 1, beta). Atlas Genet Cytogenet Oncol Haematol. May 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/IL1BID40950ch2q13.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 6 17:56:25 2008


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