MSF (MLL septin-like fusion)

GENE NAME

GENBANK NO.

REFERENCE

VARIANT

MSF

NM_006640.1

Osaka et al., 1999

see Exon/Intron and Isoform Figs.

AF17q25

none

Taki et al., 1999

see Exon/Intron and Isoform Figs.

AF17q25-1

none

Taki et al., 1999

see Exon/Intron and Isoform Figs.

AF17q25-2

none

Taki et al., 1999

see Exon/Intron and Isoform Figs.

MSF-A

AF189713.2

Kalikin et al., 2000

see Exon/Intron and Isoform Figs.

MSF-B

AF189712.2

Kalikin et al., 2000

see Exon/Intron and Isoform Figs.

MSF-C ^a

AB023208.1

Kalikin et al., 2000

see Exon/Intron and Isoform Figs.

OV/BR alpha ^b

AJ312321.1

Russell et al., 2000

AF17q25 isoform/5'UTR; 3' UTR truncated ~ 45 nt after stop codon

OV/BR beta

AJ312322.1

Russell et al., 2000

MSF-C isoform/5' UTR; 3' UTR truncated ~ 45 nt after stop codon

OV/BR gamma

AJ312319.1

direct Genbank submission McIlhatton et al., 2001

Predicted unique start Met and 17 residues; remaining sequence as AF17q25 from exon 3

OV/BR delta ^c

AJ312320.1

direct Genbank submission McIlhatton et al., 2001

Unique?

Septin D1

AF142408.1

direct Genbank submission Zhang et al., 1999

AF17q25 isoform/3' UTR; 5' UTR truncated ~ 552 nt

MSF

XM_012587.3

direct Genbank submission NCBI Annotation Project

MSF-C

MSF

XM_036873.1

direct Genbank submission NCBI Annotation Project

AF17q25 isoform/5'UTR; 3' UTR truncated ~ 45 nt after stop codon

MSF

XM_036875.1

direct Genbank submission NCBI Annotation Project

MSF

MSF

XM_036876.1

direct Genbank submission NCBI Annotation Project

MSF-A

MSF

XM_036878.1

direct Genbank submission NCBI Annotation Project

MSF-B isoform/3' UTR; 5' UTR first 13 nt unique then exon 2 sequence

MSF

XM_036879.1

direct Genbank submission NCBI Annotation Project

OV/BR gamma

MSF

XM_036880.1

direct Genbank submission NCBI Annotation Project

AF17q25 isoform/3' UTR; 5' UTR truncated ~ 516 nt

MSF

XM_036882.1

direct Genbank submission NCBI Annotation Project

MSF-C isoform/5' UTR; 3' UTR truncated ~ 45 nt after stop codon

^a cDNA isolated by Nagase et al., 1999 (KIAA0991) during efforts to sequence cDNAs with the potential to encode large proteins and was generally mapped to chromosome 17.

^b Identified as MSF-A in Russell et al., 2000 but Genbank sequence matches AF17q25.

^c From the first Met of this cDNA sequence a GTPase protein is predicted that is a subsequence of MSF-B and MSF-C isoforms. However, as no stop codon is found upstream of this Met, it is unclear if this sequence is an incomplete transcript encoding a previously identified isoform or is a unique variant.

GENE NAME	GENBANK NO.	REFERENCE	VARIANT
MSF	NM_006640.1	Osaka et al., 1999	see Exon/Intron and Isoform Figs.
AF17q25	none	Taki et al., 1999	see Exon/Intron and Isoform Figs.
AF17q25-1	none	Taki et al., 1999	see Exon/Intron and Isoform Figs.
AF17q25-2	none	Taki et al., 1999	see Exon/Intron and Isoform Figs.
MSF-A	AF189713.2	Kalikin et al., 2000	see Exon/Intron and Isoform Figs.
MSF-B	AF189712.2	Kalikin et al., 2000	see Exon/Intron and Isoform Figs.
MSF-C ^a	AB023208.1	Kalikin et al., 2000	see Exon/Intron and Isoform Figs.
OV/BR alpha ^b	AJ312321.1	Russell et al., 2000	AF17q25 isoform/5'UTR; 3' UTR truncated ~ 45 nt after stop codon
OV/BR beta	AJ312322.1	Russell et al., 2000	MSF-C isoform/5' UTR; 3' UTR truncated ~ 45 nt after stop codon
OV/BR gamma	AJ312319.1	direct Genbank submission McIlhatton et al., 2001	Predicted unique start Met and 17 residues; remaining sequence as AF17q25 from exon 3
OV/BR delta ^c	AJ312320.1	direct Genbank submission McIlhatton et al., 2001	Unique?
Septin D1	AF142408.1	direct Genbank submission Zhang et al., 1999	AF17q25 isoform/3' UTR; 5' UTR truncated ~ 552 nt
MSF	XM_012587.3	direct Genbank submission NCBI Annotation Project	MSF-C
MSF	XM_036873.1	direct Genbank submission NCBI Annotation Project	AF17q25 isoform/5'UTR; 3' UTR truncated ~ 45 nt after stop codon
MSF	XM_036875.1	direct Genbank submission NCBI Annotation Project	MSF
MSF	XM_036876.1	direct Genbank submission NCBI Annotation Project	MSF-A
MSF	XM_036878.1	direct Genbank submission NCBI Annotation Project	MSF-B isoform/3' UTR; 5' UTR first 13 nt unique then exon 2 sequence
MSF	XM_036879.1	direct Genbank submission NCBI Annotation Project	OV/BR gamma
MSF	XM_036880.1	direct Genbank submission NCBI Annotation Project	AF17q25 isoform/3' UTR; 5' UTR truncated ~ 516 nt
MSF	XM_036882.1	direct Genbank submission NCBI Annotation Project	MSF-C isoform/5' UTR; 3' UTR truncated ~ 45 nt after stop codon
^a cDNA isolated by Nagase et al., 1999 (KIAA0991) during efforts to sequence cDNAs with the potential to encode large proteins and was generally mapped to chromosome 17.
^b Identified as MSF-A in Russell et al., 2000 but Genbank sequence matches AF17q25.
^c From the first Met of this cDNA sequence a GTPase protein is predicted that is a subsequence of MSF-B and MSF-C isoforms. However, as no stop codon is found upstream of this Met, it is unclear if this sequence is an incomplete transcript encoding a previously identified isoform or is a unique variant.