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LCP1 (lymphocyte cytosolic protein1)

Identity

Other namesL-Plastine
HGNC (Hugo) LCP1
Location 13q14
Location_base_pair Starts at 45598060 and ends at 45654460 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

Description spans on a 90 kb genomic fragment; 16 exons, large first intron (20kb)
Transcription 3.7 kb mRNA; coding sequence from exon 2 to exon 16: 3500 bp

Protein

Description 570 amino acids
Expression restricted to the hematopoietic cells (leukocytes); expression induced in all tumor cells of all tissues
Localisation membrane
Homology belongs to an actin-binding protein family (T-Plastin, Fimbrin, I-Plastin)

Implicated in

Entity t(3;13)(q27;q14)/ NHL --> LCP1 - BCL6
Disease non Hodgkin follicular as well as Burkitt lymphomas
Cytogenetics t(3;13) is observed as a secondary anomaly
Hybrid/Mutated Gene both 5' L-Plastin- 3' BCL6 and 5' BCL6 - 3' L-Plastin, leading to two fusion transcripts
Abnormal Protein no fusion protein, but promoter exchange between both partner genes
  

External links

Nomenclature
HGNC (Hugo)LCP1   6528
Entrez_Gene (NCBI)LCP1  3936  lymphocyte cytosolic protein 1 (L-plastin)
Cards
AtlasLCP1ID95
GeneCards (Weizmann)LCP1
Ensembl (Hinxton)ENSG00000136167 [Gene_View]  LCP1 [Vega]
AceView (NCBI)LCP1
Genatlas (Paris)LCP1
euGene (Indiana)3936
SOURCE (Stanford)NM_002298
Gene Expression (Array Express) ENSG00000136167
Genomic and cartography
GoldenPath (UCSC)LCP1  -  13q14   chr13:45598060-45654460 -  13q14.3   [Description]    (hg18-Mar_2006)
EnsemblLCP1 - 13q14.3 [CytoView]
Mapping of homologs : NCBILCP1 [Mapview]
OMIM153430   
Gene and transcription
Gene : Genbank (Entrez)AB208984 AK058152 AK097275 AK129625 AK223305
Reference sequence (RefSeq transcript) :SRSNM_002298
Reference transcript : EntrezNM_002298
RefSeq genomic : SRSAC_000056 AC_000145 NC_000013 NT_024524 NW_001838074 NW_925473
RefSeq genomic : EntrezAC_000056 AC_000145 NC_000013 NT_024524 NW_001838074 NW_925473
Consensus coding sequences : CCDS NCBILCP1
Cluster EST : UnigeneHs.381099 [ SRS ] Hs.381099 [ NCBI ]
Alternative Splicing : Fast-db (Paris)4887
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP13796 (SRS) P13796 (Expasy) P13796 (Uniprot)
With graphics : InterProP13796
Splice isoforms : VarSplice FASTAP13796(VarSplice FASTA)
Domaine pattern : Prosite (SRS)ACTININ_1 (PS00019)    ACTININ_2 (PS00020)    CH (PS50021)    EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domain pattern : Prosite (Expaxy)ACTININ_1 (PS00019)    ACTININ_2 (PS00020)    CH (PS50021)    EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (SRS)Actinin_actin-bd_CS    Calponin-homology    Calponin_act_bd    EF-hand-like_dom    EF_Hand_1_Ca_BS    EF_HAND_2    EF_hand_Ca_bd    EF_Hand_dom   
Domains : Interpro (EBI)Actinin_actin-bd_CS    Calponin-homology    Calponin_act_bd    EF-hand-like_dom    EF_Hand_1_Ca_BS    EF_HAND_2    EF_hand_Ca_bd    EF_Hand_dom   
Related proteins : CluSTrP13796
Domain families : Pfam SRSCH (PF00307)    efhand (PF00036)   
Domain families : Pfam SangerCH (PF00307)    efhand (PF00036)   
Domain families : Pfam NCBIpfam00307    pfam00036   
Domain families : Smart EMBLCH (SM00033)  EFh (SM00054)  
Blocks (Seattle)P13796
Crystal structure of protein : PDB SRS2D85   
Crystal structure of protein : PDBSum2D85   
Crystal structure of protein : IMB2D85   
Crystal structure of protein : PDB RSDB2D85   
HPRD01082
Protein Interaction databases
DIP (DOE-UCLA)P13796
IntAct (EBI)P13796
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBILCP1
SNP : GeneSNP UtahLCP1
SNP : HGBaseLCP1
Genetic variants : HAPMAPLCP1
Somatic Mutations in Cancer : COSMICLCP1 
Translocation Breakpoints in Cancer : TICdbLCP1 
Mutations and Diseases : HGMDLCP1
Hereditary diseases : OMIM153430   
Hereditary diseases : GENETests153430   
Diseases : Genetic AssociationLCP1
General knowledge
Homologs : HomoloGeneLCP1
Homology/Alignments : Family Browser UCSCLCP1
Phylogenetic Trees/Animal Genes : TreeFamLCP1
Chemical/Protein Interactions : CTD3936
Keywords Ontology : AmiGOruffle  phagocytic cup  T cell activation during immune response  calcium ion binding  cytoplasm  cytosol  cytoskeleton  actin filament  plasma membrane  cell junction  regulation of intracellular protein transport  identical protein binding  actin filament binding  actin filament bundle assembly  
Keywords Ontology : EGO-EBIruffle  phagocytic cup  T cell activation during immune response  calcium ion binding  cytoplasm  cytosol  cytoskeleton  actin filament  plasma membrane  cell junction  regulation of intracellular protein transport  identical protein binding  actin filament binding  actin filament bundle assembly  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesLCP1 Related clones (RZPD - Berlin)
Literature
PubMed37 Pubmed reference(s) in Entrez
PubGeneLCP1

Bibliography

Molecular cloning and characterization of plastin, a human leukocyte protein expressed in transformed human fibroblasts.
Lin CS, Aebersold RH, Kent SB, Varma M, Leavitt J
Molecular and cellular biology. 1988 ; 8 (11) : 4659-4668.
PMID 3211125
 
Human plastin genes. Comparative gene structure, chromosome location, and differential expression in normal and neoplastic cells.
Lin CS, Park T, Chen ZP, Leavitt J
The Journal of biological chemistry. 1993 ; 268 (4) : 2781-2792.
PMID 8428952
 
Activation of the leukocyte plastin gene occurs in most human cancer cells.
Park T, Chen ZP, Leavitt J
Cancer research. 1994 ; 54 (7) : 1775-1781.
PMID 8137292
 
Interaction of a Dictyostelium member of the plastin/fimbrin family with actin filaments and actin-myosin complexes.
Prassler J, Stocker S, Marriott G, Heidecker M, Kellermann J, Gerisch G
Molecular biology of the cell. 1997 ; 8 (1) : 83-95.
PMID 9017597
 
Cytogenetics in multiple myeloma: a multicenter study of 24 patients with t(11;14)(q13;q32) or its variant.
LaˆØ JL, Michaux L, Dastugue N, Vasseur F, Daudignon A, Facon T, Bauters F, Zandecki M
Cancer genetics and cytogenetics. 1998 ; 104 (2) : 133-138.
PMID 9666807
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written03-1998Sylvie Galiègue-Zouitina
U.124 INSERM, I.R.C.L., Place de Verdun, 59045 LILLE Cedex, France

Citation

This paper should be referenced as such :
Galiègue-Zouitina S . LCP1 (lymphocyte cytosolic protein1). Atlas Genet Cytogenet Oncol Haematol. March 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/LCP1ID95.html

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indexed on : Sat Feb 6 13:40:15 CET 2010

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