Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MSH3

Identity

Other namesDUP
hMSH3
MRP1
Hugo MSH3
Location 5q11-q12
Local_order Between the DHFR and RASGRF2 genes.

DNA/RNA

Description The MSH3 gene is composed of 24 exons spanning in a region of 222 Kb.
Transcription There are two major transcripts of 5 kb and 3,8 kb under the control of two different polyadenilation sites.

Protein

Description Amino acids: 1137. Molecular Weight: 127 KDa. MSH3 is a protein involved in the mismatch repair process after DNA replication.
Expression Expression of MSH3 together with the dihydrofolate reductase (DHFR) gene appear to be regulated by a bidirectional promoter composed of multiple GC boxes and two initiator elements. MSH3 is expressed in all human tissues at low levels but with variable intensities, with higher expression in testis and pancreas and lower in small intestine and colon.
Function MSH3 binds to MSH2 to form the MutSb heterodimer, which binds to insertion-deletion mismatches of two or more base pairs. Thereafter the MutS complex associates with the MutL complex and recruits the proteins needed for DNA excision and repair.
Homology MSH3 is homologue to the bacterial MutS gene and to the Msh3 gene in S. cerevisiae. Homology is higher in the C-terminal region.

Mutations

Somatic MSH3 has insertions/deletions in a A(8) repeat in tumours showing microsatellite instability (MSI). As MSH3 is a mismatch repair gene and is mutated in a microsatellite only in MSI tumours is considered to be a secondary mutator that enhances a more severe MSI.

Implicated in

Entity MSI (MicroSatellite Instability).
Note Tumours in which the molecular feature that leads to cancer is the lost of the mismatch repair (MMR) system.
Disease This phenotype is present in 15% of colorectal cancer, gastric cancer and endometrial cancer, and with lower incidence in some other tissues.
Oncogenesis The average frequencies of the microsatellite mutation reported in sporadic MSI from colorectal, gastric and endometrial cancer are 38%, 39% and 25% respectively. In hereditary MSI (or HNPCC) is 51%.
  
Entity Hematological malignancies.
Oncogenesis It has been reported loss of expression of MSH3 at the mRNA level in some hematological malignancies including chronic myelogenous leukemia and acute myelogenous leukemia, acute lymphocytic leukemia and myelodysplastic syndrome.
  

External links

Nomenclature
HugoMSH3
GDBMSH3
Entrez_GeneMSH3  4437  mutS homolog 3 (E. coli)
Cards
AtlasMSH3ID341ch5q11
GeneCardsMSH3
EnsemblMSH3 [Search_View]   ENSG00000113318 [Gene_View]
GenatlasMSH3
GeneLynxMSH3
eGenomeMSH3
euGene4437
Genomic and cartography
GoldenPathMSH3  -     chr5:79986050-80208389 +  5q11-q12   [Description]    (hg18-Mar_2006)
EnsemblMSH3 - 5q11-q12 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneMSH3
Gene and transcription
GenbankAA601983 [ ENTREZ ]
GenbankAI817671 [ ENTREZ ]
GenbankAK289856 [ ENTREZ ]
GenbankBC004177 [ ENTREZ ]
GenbankBC011817 [ ENTREZ ]
RefSeqNM_002439 [ SRS ]    NM_002439 [ ENTREZ ]
RefSeqAC_000048 [ SRS ]    AC_000048 [ ENTREZ ]
RefSeqNC_000005 [ SRS ]    NC_000005 [ ENTREZ ]
RefSeqNT_006713 [ SRS ]    NT_006713 [ ENTREZ ]
RefSeqNW_922729 [ SRS ]    NW_922729 [ ENTREZ ]
AceViewMSH3 AceView - NCBI
UnigeneHs.648635 [ SRS ]    Hs.648635 [ NCBI ]     HS648635 [ spliceNest ]
Fast-db6754 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtP20585 [ SRS]    P20585 [ EXPASY ]     P20585 [ INTERPRO ]
PrositePS00486 DNA_MISMATCH_REPAIR_2 [ SRS ]    PS00486 DNA_MISMATCH_REPAIR_2 [ Expasy ]
InterproIPR007695 DNA_mismatch_repair_MutS-lik_N [ SRS ]    IPR007695 DNA_mismatch_repair_MutS-lik_N [ EBI ]
InterproIPR000432 DNA_mismatch_repair_MutS_C [ SRS ]    IPR000432 DNA_mismatch_repair_MutS_C [ EBI ]
InterproIPR007860 DNA_mismatch_repair_MutS_connt [ SRS ]    IPR007860 DNA_mismatch_repair_MutS_connt [ EBI ]
InterproIPR007696 DNA_mismatch_repair_MutS_core [ SRS ]    IPR007696 DNA_mismatch_repair_MutS_core [ EBI ]
CluSTrP20585
PfamPF01624 MutS_I [ SRS ]    PF01624 MutS_I [ Sanger ]    pfam01624 [ NCBI-CDD ]
PfamPF05188 MutS_II [ SRS ]    PF05188 MutS_II [ Sanger ]    pfam05188 [ NCBI-CDD ]
PfamPF05192 MutS_III [ SRS ]    PF05192 MutS_III [ Sanger ]    pfam05192 [ NCBI-CDD ]
PfamPF00488 MutS_V [ SRS ]    PF00488 MutS_V [ Sanger ]    pfam00488 [ NCBI-CDD ]
SmartSM00534 MUTSac [EMBL]
SmartSM00533 MUTSd [EMBL]
ProdomPD001263 MutS_C[INRA-Toulouse]
ProdomP20585 MSH3_HUMAN [ Domain structure ]   P20585 MSH3_HUMAN  [ sequences sharing at least 1 domain ]
BlocksP20585
HPRD02931
Protein Interaction databases
DIPP20585
IntActP20585
Polymorphism : SNP, mutations, diseases
OMIM600887    [ map ]   
GENECLINICS600887
SNPMSH3 [dbSNP-NCBI]  
SNPNM_002439 [SNP-NCI]  
SNPMSH3 [GeneSNPs - Utah]  MSH3] [HGBASE - SRS]
HAPMAPMSH3 [HAPMAP]  
COSMICMSH3 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDMSH3
General knowledge
Family BrowserMSH3 [UCSC Family Browser]
SOURCENM_002439
SMDHs.648635
SAGEHs.648635
GOnucleotide binding [Amigo]  nucleotide binding
GOpurine-specific mismatch base pair DNA N-glycosylase activity [Amigo]  purine-specific mismatch base pair DNA N-glycosylase activity
GOdamaged DNA binding [Amigo]  damaged DNA binding
GOsingle-stranded DNA binding [Amigo]  single-stranded DNA binding
GOprotein binding [Amigo]  protein binding
GOATP binding [Amigo]  ATP binding
GObase-excision repair [Amigo]  base-excision repair
GOmismatch repair [Amigo]  mismatch repair
GOmismatch repair [Amigo]  mismatch repair
GOsomatic recombination of immunoglobulin gene segments [Amigo]  somatic recombination of immunoglobulin gene segments
GOcentromeric DNA binding [Amigo]  centromeric DNA binding
GOmismatched DNA binding [Amigo]  mismatched DNA binding
GOguanine/thymine mispair binding [Amigo]  guanine/thymine mispair binding
GOsingle guanine insertion binding [Amigo]  single guanine insertion binding
GOdinucleotide repeat insertion binding [Amigo]  dinucleotide repeat insertion binding
GOMutSbeta complex [Amigo]  MutSbeta complex
GOoxidized purine DNA binding [Amigo]  oxidized purine DNA binding
GOprotein homodimerization activity [Amigo]  protein homodimerization activity
GOmaintenance of DNA repeat elements [Amigo]  maintenance of DNA repeat elements
KEGGColorectal cancer
PubGeneMSH3
TreeFamMSH3
CTD4437 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeMSH3 Related clones (RZPD - Berlin)
PubMed
PubMed30 Pubmed reference(s) in LocusLink

Bibliography

Isolation and characterization of cDNA clones derived from the divergently transcribed gene in the region upstream from the human dihydrofolate reductase gene.
Fujii H, Shimada T
The Journal of biological chemistry. 1989 ; 264 (17) : 10057-10064.
PMID 2722860
 
Loss of expression of the human MSH3 gene in hematological malignancies.
Inokuchi K, Ikejima M, Watanabe A, Nakajima E, Orimo H, Nomura T, Shimada T
Biochemical and biophysical research communications. 1995 ; 214 (1) : 171-179.
PMID 7669036
 
Mutation of MSH3 in endometrial cancer and evidence for its functional role in heteroduplex repair.
Risinger JI, Umar A, Boyd J, Berchuck A, Kunkel TA, Barrett JC
Nature genetics. 1996 ; 14 (1) : 102-105.
PMID 8782829
 
Genomic organization and expression of the human MSH3 gene.
Watanabe A, Ikejima M, Suzuki N, Shimada T
Genomics. 1996 ; 31 (3) : 311-318.
PMID 8838312
 
HNPCC-like cancer predisposition in mice through simultaneous loss of Msh3 and Msh6 mismatch-repair protein functions.
de Wind N, Dekker M, Claij N, Jansen L, van Klink Y, Radman M, Riggins G, van der Valk M, van't Wout K, te Riele H
Nature genetics. 1999 ; 23 (3) : 359-362.
PMID 10545954
 
Mutations at coding repeat sequences in mismatch repair-deficient human cancers: toward a new concept of target genes for instability.
Duval A, Hamelin R
Cancer research. 2002 ; 62 (9) : 2447-2454.
PMID 11980631
 
DNA mismatch repair defects: role in colorectal carcinogenesis.
Jacob S, Praz F
Biochimie. 2002 ; 84 (1) : 27-47.
PMID 11900875
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written07-2006Enric Domingo, Simo Schwartz Jr

Citation

This paper should be referenced as such :
Domingo E, Schwartz S Jr . MSH3. Atlas Genet Cytogenet Oncol Haematol. July 2006 .
URL : http://AtlasGeneticsOncology.org/Genes/MSH3ID341ch5q11.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:25:09 2008


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