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NF2 (neurofibromatosis type 2)

Identity

Other namesSCH
HGNC (Hugo) NF2
Location 22q12.1-12.2
Location_base_pair Starts at 28329545 and ends at 28424589 bp from pter ( according to hg18-Mar_2006)  [Mapping]
Local_order 22q12.1-12.2 junction, incidentally not far from EWS

DNA/RNA

Description exons 17 exons (1-15, 17 constitutive, 16 alternatively spliced); spans 120 kb; open reading frame: 1.8 kb
Transcription alternate splicing, in particular after exon 15

Protein

Description called merlin, schwannomin, or SCH; isoform 1 595 amino acids, isoform 2 590 amino acids (due to inclusion of exon 16 in transcript) ; 66 KDa; NH2 -- FERM domain -- large a helix domain -- COOH
Expression wide: in lung, kidney, ovary, breast, placenta, neuroblasts; high in fetal brain
Localisation membrane associated interacts with integral membrane proteins and actin-cytoskeleton
Function membrane-cytoskeleton anchor (as APC also appears to be); role in the development of extraembryonic structures before gastrulation; has characteristics of a tumour suppressor, as has been found in sporadic as well as neurofibromatosis type 2 induced schwannomas and meningiomas
Homology ezrin, radixin, moesin, members of the erythrocytes band 4.1 family, especially in the N-terminal FERM domain

Mutations

Germinal inborn condition of neurofibromatosis type 2 patients: protein truncations due to various frameshift deletions or insertions or nonsense mutations; splice-site or missense mutations are also found; phenotype-genotype correlations are observed (i.e. that severe phenotype are found in cases with protein truncations rather than those with amino acid substitution)
Somatic mutation and allele loss events in tumours in neurofibromatosis type 2 and in sporadic schwannomas and meningiomas are in accordance with the two-hit model for neoplasia, as is found in retinoblastoma

Implicated in

Entity neurofibromatosis type 2
Disease autosomal dominant tumor prone disease; neurofibromatosis type 2 (NF2: the same symbol is used for the disease neurofibromatosis type 2 and the gene) is an hamartoneoplastic syndrome
Prognosis hamartomas have a potential towards neoplasia; those, in NF2, are The tumors of NF2 are slow-growing benign schwannomas which do not progress to malignancy and meningiomas
  
Entity sporadic meningioma
  
Entity sporadic schwannoma
  
Entity other tumours: ependymoma; mesothelioma
  

External links

Nomenclature
HGNC (Hugo)NF2   7773
Entrez_Gene (NCBI)NF2  4771  neurofibromin 2 (merlin)
Cards
AtlasNF2117
GeneCards (Weizmann)NF2
Ensembl (Hinxton)ENSG00000186575 [Gene_View]  NF2 [Vega]
AceView (NCBI)NF2
Genatlas (Paris)NF2
euGene (Indiana)4771
SOURCE (Stanford)NM_000268 NM_016418 NM_181825 NM_181828 NM_181829 NM_181830 NM_181831 NM_181832 NM_181833
Gene Expression (Array Express) ENSG00000186575
Genomic and cartography
GoldenPath (UCSC)NF2  -     chr22:28329545-28424589 +  22q12.2   [Description]    (hg18-Mar_2006)
EnsemblNF2 - 22q12.2 [CytoView]
Mapping of homologs : NCBINF2 [Mapview]
OMIM101000   162091   607174   607379   
Gene and transcription
Gene : Genbank (Entrez)AF113694 AF122827 AF122828 AF123570 AF369657
Reference sequence (RefSeq transcript) :SRSNM_000268 NM_016418 NM_181825 NM_181828 NM_181829 NM_181830 NM_181831 NM_181832 NM_181833
Reference transcript : EntrezNM_000268 NM_016418 NM_181825 NM_181828 NM_181829 NM_181830 NM_181831 NM_181832 NM_181833
RefSeq genomic : SRSAC_000065 AC_000154 NC_000022 NG_009057 NT_011520 NW_001838745 NW_927628
RefSeq genomic : EntrezAC_000065 AC_000154 NC_000022 NG_009057 NT_011520 NW_001838745 NW_927628
Consensus coding sequences : CCDS NCBINF2
Cluster EST : UnigeneHs.187898 [ SRS ] Hs.187898 [ NCBI ]
Alternative Splicing : Fast-db (Paris)3950
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP35240 (SRS) P35240 (Expasy) P35240 (Uniprot)
With graphics : InterProP35240
Splice isoforms : VarSplice FASTAP35240(VarSplice FASTA)
Domaine pattern : Prosite (SRS)FERM_1 (PS00660)    FERM_2 (PS00661)    FERM_3 (PS50057)   
Domain pattern : Prosite (Expaxy)FERM_1 (PS00660)    FERM_2 (PS00661)    FERM_3 (PS50057)   
Domains : Interpro (SRS)Band_4.1_merlin    Band_41_domain    Band_41_sg    ERM    ERM_C    Ez/rad/moesin    FERM/acyl-CoA_bd_prot_3-hlx    FERM_central    FERM_CS    FERM_domain    FERM_N    FERM_PH-like_C    Moesin   
Domains : Interpro (EBI)Band_4.1_merlin    Band_41_domain    Band_41_sg    ERM    ERM_C    Ez/rad/moesin    FERM/acyl-CoA_bd_prot_3-hlx    FERM_central    FERM_CS    FERM_domain    FERM_N    FERM_PH-like_C    Moesin   
Related proteins : CluSTrP35240
Domain families : Pfam SRSERM (PF00769)    FERM_C (PF09380)    FERM_M (PF00373)    FERM_N (PF09379)   
Domain families : Pfam SangerERM (PF00769)    FERM_C (PF09380)    FERM_M (PF00373)    FERM_N (PF09379)   
Domain families : Pfam NCBIpfam00769    pfam09380    pfam00373    pfam09379   
Domain families : Smart EMBLB41 (SM00295)  
Blocks (Seattle)P35240
Crystal structure of protein : PDB SRS1H4R   
Crystal structure of protein : PDBSum1H4R   
Crystal structure of protein : IMB1H4R   
Crystal structure of protein : PDB RSDB1H4R   
HPRD06980
Protein Interaction databases
DIP (DOE-UCLA)P35240
IntAct (EBI)P35240
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBINF2
SNP : GeneSNP UtahNF2
SNP : HGBaseNF2
Genetic variants : HAPMAPNF2
Somatic Mutations in Cancer : COSMICNF2 
Mutations and Diseases : HGMDNF2
Hereditary diseases : OMIM101000    162091    607174    607379   
Hereditary diseases : GENETests101000    162091    607174    607379   
Diseases : Genetic AssociationNF2
General knowledge
Homologs : HomoloGeneNF2
Homology/Alignments : Family Browser UCSCNF2
Phylogenetic Trees/Animal Genes : TreeFamNF2
Chemical/Protein Interactions : CTD4771
Keywords Ontology : AmiGOmesoderm formation  ruffle  negative regulation of cell-matrix adhesion  nucleus  nucleolus  cytoplasm  early endosome  cytoskeleton  plasma membrane  adherens junction  negative regulation of protein kinase activity  ectoderm development  cytoskeletal protein binding  negative regulation of DNA replication  negative regulation of cell proliferation  negative regulation of cell proliferation  Schwann cell proliferation  extrinsic to membrane  negative regulation of cell-cell adhesion  lamellipodium  actin cytoskeleton organization  filopodium  negative regulation of cell migration  cleavage furrow  odontogenesis of dentine-containing tooth  negative regulation of tyrosine phosphorylation of Stat3 protein  negative regulation of tyrosine phosphorylation of Stat5 protein  negative regulation of MAPKKK cascade  cell-cell junction organization  negative regulation of JAK-STAT cascade  perinuclear region of cytoplasm  positive regulation of stress fiber assembly  
Keywords Ontology : EGO-EBImesoderm formation  ruffle  negative regulation of cell-matrix adhesion  nucleus  nucleolus  cytoplasm  early endosome  cytoskeleton  plasma membrane  adherens junction  negative regulation of protein kinase activity  ectoderm development  cytoskeletal protein binding  negative regulation of DNA replication  negative regulation of cell proliferation  negative regulation of cell proliferation  Schwann cell proliferation  extrinsic to membrane  negative regulation of cell-cell adhesion  lamellipodium  actin cytoskeleton organization  filopodium  negative regulation of cell migration  cleavage furrow  odontogenesis of dentine-containing tooth  negative regulation of tyrosine phosphorylation of Stat3 protein  negative regulation of tyrosine phosphorylation of Stat5 protein  negative regulation of MAPKKK cascade  cell-cell junction organization  negative regulation of JAK-STAT cascade  perinuclear region of cytoplasm  positive regulation of stress fiber assembly  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesNF2 Related clones (RZPD - Berlin)
Literature
PubMed138 Pubmed reference(s) in Entrez
PubGeneNF2

Bibliography

A novel moesin-, ezrin-, radixin-like gene is a candidate for the neurofibromatosis 2 tumor suppressor.
Trofatter JA, MacCollin MM, Rutter JL, Murrell JR, Duyao MP, Parry DM, Eldridge R, Kley N, Menon AG, Pulaski K
Cell. 1993 ; 72 (5) : 791-800.
PMID 8453669
 
Alteration in a new gene encoding a putative membrane-organizing protein causes neuro-fibromatosis type 2.
Rouleau GA, Merel P, Lutchman M, Sanson M, Zucman J, Marineau C, Hoang-Xuan K, Demczuk S, Desmaze C, Plougastel B
Nature. 1993 ; 363 (6429) : 515-521.
PMID 8379998
 
Neurofibromatosis 2 (NF2): clinical characteristics of 63 affected individuals and clinical evidence for heterogeneity.
Parry DM, Eldridge R, Kaiser-Kupfer MI, Bouzas EA, Pikus A, Patronas N
American journal of medical genetics. 1994 ; 52 (4) : 450-461.
PMID 7747758
 
Germ-line mutations in the neurofibromatosis 2 gene: correlations with disease severity and retinal abnormalities.
Parry DM, MacCollin MM, Kaiser-Kupfer MI, Pulaski K, Nicholson HS, Bolesta M, Eldridge R, Gusella JF
American journal of human genetics. 1996 ; 59 (3) : 529-539.
PMID 8751853
 
Type of mutation in the neurofibromatosis type 2 gene (NF2) frequently determines severity of disease.
Ruttledge MH, Andermann AA, Phelan CM, Claudio JO, Han FY, Chretien N, Rangaratnam S, MacCollin M, Short P, Parry D, Michels V, Riccardi VM, Weksberg R, Kitamura K, Bradburn JM, Hall BD, Propping P, Rouleau GA
American journal of human genetics. 1996 ; 59 (2) : 331-342.
PMID 8755919
 
The Nf2 tumor suppressor gene product is essential for extraembryonic development immediately prior to gastrulation.
McClatchey AI, Saotome I, Ramesh V, Gusella JF, Jacks T
Genes & development. 1997 ; 11 (10) : 1253-1265.
PMID 9171370
 
Impaired interaction of naturally occurring mutant NF2 protein with actin-based cytoskeleton and membrane.
Deguen B, Mˆ©rel P, Goutebroze L, Giovannini M, Reggio H, Arpin M, Thomas G
Human molecular genetics. 1998 ; 7 (2) : 217-226.
PMID 9425229
 
Merlin: the neurofibromatosis 2 tumor suppressor.
Gusella JF, Ramesh V, MacCollin M, Jacoby LB
Biochimica et biophysica acta. 1999 ; 1423 (2) : M29-M36.
PMID 10214350
 
Conditional biallelic Nf2 mutation in the mouse promotes manifestations of human neurofibromatosis type 2.
Giovannini M, Robanus-Maandag E, van der Valk M, Niwa-Kawakita M, Abramowski V, Goutebroze L, Woodruff JM, Berns A, Thomas G
Genes & development. 2000 ; 14 (13) : 1617-1630.
PMID 10887156
 
The parental origin of new mutations in neurofibromatosis 2.
Kluwe L, Mautner V, Parry DM, Jacoby LB, Baser M, Gusella J, Davis K, Stavrou D, MacCollin M
Neurogenetics. 2000 ; 3 (1) : 17-24.
PMID 11085592
 
Advances in neurofibromatosis 2 (NF2): a workshop report.
Lim DJ, Rubenstein AE, Evans DG, Jacks T, Seizinger BG, Baser ME, Beebe D, Brackmann DE, Chiocca EA, Fehon RG, Giovannini M, Glazer R, Gusella JF, Gutmann DH, Korf B, Lieberman F, Martuza R, McClatchey AI, Parry DM, Pulst SM, Ramesh V, Ramsey WJ, Ratner N, Rutkowski JL, Ruttledge M, Weinstein DE
Journal of neurogenetics. 2000 ; 14 (2) : 63-106.
PMID 10992163
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-1997Jean-Loup Huret
Updated03-1998Jean-Loup Huret
Updated02-2001James F Gusella

Citation

This paper should be referenced as such :
Huret JL . NF2 (neurofibromatosis type 2). Atlas Genet Cytogenet Oncol Haematol. September 1997 .
URL : http://AtlasGeneticsOncology.org/Genes/NF2117.html
Huret JL . NF2 (neurofibromatosis type 2). Atlas Genet Cytogenet Oncol Haematol. March 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/NF2117.html
Gusella JF . NF2 (neurofibromatosis type 2). Atlas Genet Cytogenet Oncol Haematol. February 2001 .
URL : http://AtlasGeneticsOncology.org/Genes/NF2117.html

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indexed on : Sat Feb 6 13:44:41 CET 2010

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