Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NFKB2

Identity

Other namesNF-kB p100
NF-kB p52
Lyt10
Hugo NFKB2
Location 10q24
Note see also, in the Deep Insight section: Upstream Signal Transduction of NF-kB Activation

DNA/RNA

Description The gene encoding human nfkb2 has 24 exons spanning 8 kb. The expression of nfkb2 can be regulated by two distinct promoters, P1 and P2, in which a number of consensus binding sites for transcription factors, including SP1, AP1 and putative NF-kappa B (kappa B sites), were identified.

Protein

 
Description The human nfkb2 gene encodes a protein composed 900 amino acids with an approximately molecular weight of 100 kDa, which was considered as a precursor of p52 subunit of NF-kB complexes. The structural characteristics of NF-kB2 are much similar with that of NF-kB1: A N-terminal RHD; two nuclear localization sequences within the C-terminus of RHD, a putative GRR region that possibly contributes to the generation of NF-kB p52 from the precursor, NF-kB2. The C-terminal region of NF-kB2 also contains multiple copies of the so-called ankyrin repeats and one proline, glutamic acid, serine, and threonine (PEST) domain. Studies demonstrated that NF-kB2 was posttranslationally cleaved to produce the p52 molecule through the ubiquitin-proteasome dependent degradation of the C-terminal 406-900 portion of NF-kB2. However, other studies revealed that the mechanism for the generation of NF-kB p52 is through cotranslational processing. Recent studies demonstrated that the processing of NF-kB p52 required IKKa- and/or NIK-dependent C-terminal phosphorylation of NF-kB2.
Expression nfkb2 is expressed mainly in lymphoid cells and mononuclear cells.
Localisation cytosol, nuclei after activation.
Function regulation of the genes involved in cell-to-cell interaction, intercellular communication, cell recruitment or transmigration, amplification or spreading of primary pathogenic signals, and initiation or acceleration of tumorigenesis. Similar with NF-kB1, the full length of NF-kB2 can serve as an endogenous inhibitor for the NF-kB p50/ p65(RelA) or NF-kB p52/p65 heterodimer. The homodimer of NF-kB p52 was transcriptionally inactive in the absence of Bcl3. Furthermore, the NF-kB p52 homodimer may function to competitively inhibit B binding by transactivating NF- B dimers. The Bcl3 protein can form a complex with this homodimer at B sites and act as a transactivator of NF-kB p52 homodimer. Interaction with : members of IkB family and Rel family, Bcl3.

Implicated in

Entity hematological malignancies (see below) and other diseases: autoimmune arthritis, glomerulonephritis, asthma, inflammatory bowel disease, septic shock, lung fibrosis, cancer, HTLV-1 infection, and AIDS.
Disease t(10;14)(q24;q11) or t(10;14)(q24;q32) in hematological malignancies
Cytogenetics poor.
Oncogenesis Unlike its relative nfkb1, rearrangement of nfkb2 gene locus has been found in many forms of lymophomas. The chromosomal translocations by t(10;14)(q24;q11) and t(10;14)(q24;q32) cause deletions of sequences encoding the ankyrin repeat motif of NF-kB2. Consequently, this carboxyl terminal truncated NF-kB2 is constitutively located in the nucleus of cells, which was found in small percentage of B-cell non-Hodgkin's lymphoma, cutaneous lymphomas, T-cell acute lymphoblastic leukemia, chronic lymphocytic leukemias, and multiple myelomas. Chromosomal translocation generated a fusion NF-kB2- IGHA1 or NF-kB2- TCRa or TCRd transcriptional unit.
  

External links

Nomenclature
HugoNFKB2
GDBNFKB2
Entrez_GeneNFKB2  4791  nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
Cards
AtlasNFKB2ID362
GeneCardsNFKB2
EnsemblNFKB2 [Search_View]   ENSG00000077150 [Gene_View]
GenatlasNFKB2
GeneLynxNFKB2
eGenomeNFKB2
euGene4791
Genomic and cartography
GoldenPathNFKB2  -  10q24   chr10:104144329-104152270 +  10q24   [Description]    (hg18-Mar_2006)
EnsemblNFKB2 - 10q24 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneNFKB2
Gene and transcription
GenbankAK098415 [ ENTREZ ]
GenbankAK292654 [ ENTREZ ]
GenbankBC002844 [ ENTREZ ]
GenbankBT009769 [ ENTREZ ]
GenbankBY799958 [ ENTREZ ]
RefSeqNM_001077493 [ SRS ]    NM_001077493 [ ENTREZ ]
RefSeqNM_001077494 [ SRS ]    NM_001077494 [ ENTREZ ]
RefSeqNM_002502 [ SRS ]    NM_002502 [ ENTREZ ]
RefSeqAC_000053 [ SRS ]    AC_000053 [ ENTREZ ]
RefSeqNC_000010 [ SRS ]    NC_000010 [ ENTREZ ]
RefSeqNT_030059 [ SRS ]    NT_030059 [ ENTREZ ]
RefSeqNW_924884 [ SRS ]    NW_924884 [ ENTREZ ]
AceViewNFKB2 AceView - NCBI
UnigeneHs.73090 [ SRS ]    Hs.73090 [ NCBI ]     HS73090 [ spliceNest ]
Fast-db16589 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ00653 [ SRS]    Q00653 [ EXPASY ]     Q00653 [ INTERPRO ]
PrositePS50297 ANK_REP_REGION [ SRS ]    PS50297 ANK_REP_REGION [ Expasy ]
PrositePS50088 ANK_REPEAT [ SRS ]    PS50088 ANK_REPEAT [ Expasy ]
PrositePS50017 DEATH_DOMAIN [ SRS ]    PS50017 DEATH_DOMAIN [ Expasy ]
PrositePS01204 REL_1 [ SRS ]    PS01204 REL_1 [ Expasy ]
PrositePS50254 REL_2 [ SRS ]    PS50254 REL_2 [ Expasy ]
InterproIPR002110 ANK [ SRS ]    IPR002110 ANK [ EBI ]
InterproIPR000488 Death [ SRS ]    IPR000488 Death [ EBI ]
InterproIPR011029 DEATH_like [ SRS ]    IPR011029 DEATH_like [ EBI ]
InterproIPR013783 Ig-like_fold [ SRS ]    IPR013783 Ig-like_fold [ EBI ]
InterproIPR002909 IPT_TIG_rcpt [ SRS ]    IPR002909 IPT_TIG_rcpt [ EBI ]
InterproIPR015682 NF-kappaB_related2 [ SRS ]    IPR015682 NF-kappaB_related2 [ EBI ]
InterproIPR000451 NF_Rel_dor [ SRS ]    IPR000451 NF_Rel_dor [ EBI ]
InterproIPR011539 RHD [ SRS ]    IPR011539 RHD [ EBI ]
CluSTrQ00653
PfamPF00023 Ank [ SRS ]    PF00023 Ank [ Sanger ]    pfam00023 [ NCBI-CDD ]
PfamPF00531 Death [ SRS ]    PF00531 Death [ Sanger ]    pfam00531 [ NCBI-CDD ]
PfamPF00554 RHD [ SRS ]    PF00554 RHD [ Sanger ]    pfam00554 [ NCBI-CDD ]
PfamPF01833 TIG [ SRS ]    PF01833 TIG [ Sanger ]    pfam01833 [ NCBI-CDD ]
SmartSM00248 ANK [EMBL]
SmartSM00005 DEATH [EMBL]
SmartSM00429 IPT [EMBL]
BlocksQ00653
PDB1A3Q [ SRS ]    1A3Q [ PdbSum ],   1A3Q [ IMB ]   1A3Q [ RSDB ]
PDB2D96 [ SRS ]    2D96 [ PdbSum ],   2D96 [ IMB ]   2D96 [ RSDB ]
HPRD01239
Protein Interaction databases
DIPQ00653
IntActQ00653
Polymorphism : SNP, mutations, diseases
OMIM164012    [ map ]   
GENECLINICS164012
SNPNFKB2 [dbSNP-NCBI]  
SNPNM_001077493 [SNP-NCI]  
SNPNM_001077494 [SNP-NCI]  
SNPNM_002502 [SNP-NCI]  
SNPNFKB2 [GeneSNPs - Utah]  NFKB2] [HGBASE - SRS]
HAPMAPNFKB2 [HAPMAP]  
HGMDNFKB2
General knowledge
Family BrowserNFKB2 [UCSC Family Browser]
SOURCENM_001077493
SOURCENM_001077494
SOURCENM_002502
SMDHs.73090
SAGEHs.73090
GOfollicular dendritic cell differentiation [Amigo]  follicular dendritic cell differentiation
GOgerminal center formation [Amigo]  germinal center formation
GOtranscription factor activity [Amigo]  transcription factor activity
GOtranscription coactivator activity [Amigo]  transcription coactivator activity
GOprotein binding [Amigo]  protein binding
GOnucleus [Amigo]  nucleus
GOcytoplasm [Amigo]  cytoplasm
GOregulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GOsignal transduction [Amigo]  signal transduction
GOextracellular matrix organization and biogenesis [Amigo]  extracellular matrix organization and biogenesis
GOBcl3/NF-kappaB2 complex [Amigo]  Bcl3/NF-kappaB2 complex
GOspleen development [Amigo]  spleen development
KEGGMAPK signaling pathway
KEGGApoptosis
KEGGToll-like receptor signaling pathway
KEGGT cell receptor signaling pathway
KEGGB cell receptor signaling pathway
KEGGAdipocytokine signaling pathway
KEGGEpithelial cell signaling in Helicobacter pylori infection
PubGeneNFKB2
TreeFamNFKB2
CTD4791 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeNFKB2 Related clones (RZPD - Berlin)
PubMed
PubMed129 Pubmed reference(s) in LocusLink

Bibliography

B cell lymphoma-associated chromosomal translocation involves candidate oncogene lyt-10, homologous to NF-kappa B p50.
Neri A, Chang CC, Lombardi L, Salina M, Corradini P, Maiolo AT, Chaganti RS, Dalla-Favera R
Cell. 1991 ; 67 (6) : 1075-1087.
PMID 1760839
 
Related subunits of NF-kappa B map to two distinct loci associated with translocations in leukemia, NFKB1 and NFKB2.
Liptay S, Schmid RM, Perkins ND, Meltzer P, Altherr MR, McPherson JD, Wasmuth JJ, Nabel GJ
Genomics. 1992 ; 13 (2) : 287-292.
PMID 1612589
 
The NF-kappa B and I kappa B proteins: new discoveries and insights.
Baldwin AS Jr
Annual review of immunology. 1996 ; 14 : 649-683.
PMID 8717528
 
NF-kappa B and Rel proteins: evolutionarily conserved mediators of immune responses.
Ghosh S, May MJ, Kopp EB
Annual review of immunology. 1998 ; 16 : 225-260.
PMID 9597130
 
New insights into the role of nuclear factor-kappaB, a ubiquitous transcription factor in the initiation of diseases.
Chen F, Castranova V, Shi X, Demers LM
Clinical chemistry. 1999 ; 45 (1) : 7-17.
PMID 9895331
 
The generation of nfkb2 p52: mechanism and efficiency.
Heusch M, Lin L, Geleziunas R, Greene WC
Oncogene. 1999 ; 18 (46) : 6201-6208.
PMID 10597218
 
Activation by IKKalpha of a second, evolutionary conserved, NF-kappa B signaling pathway.
Senftleben U, Cao Y, Xiao G, Greten FR, Krˆ§hn G, Bonizzi G, Chen Y, Hu Y, Fong A, Sun SC, Karin M
Science (New York, N.Y.). 2001 ; 293 (5534) : 1495-1499.
PMID 11520989
 
Retroviral oncoprotein Tax induces processing of NF-kappaB2/p100 in T cells: evidence for the involvement of IKKalpha.
Xiao G, Cvijic ME, Fong A, Harhaj EW, Uhlik MT, Waterfield M, Sun SC
The EMBO journal. 2001 ; 20 (23) : 6805-6815.
PMID 11726516
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written01-2002Fei Chen

Citation

This paper should be referenced as such :
Chen F . NFKB2. Atlas Genet Cytogenet Oncol Haematol. January 2002 .
URL : http://AtlasGeneticsOncology.org/Genes/NFKB2ID362.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:25:28 2008


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

j.l.huret@chu-poitiers.fr.