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NOTCH3 (Notch homolog 3 (Drosophila))

Identity

Other namesCADASIL
CASIL
Hugo NOTCH3
Location 19p13.12
Local_order Gene orientation: telomere-3¹ NOTCH3 5¹-centromere.

DNA/RNA

Description The Notch3 gene is encoded by 33 exons spanning 41.35 kb that are located on Chromosome 19p13.12.
Transcription 8.089 Kb mRNA, the coding sequence is from 77 bp-7042 bp.

Protein

Note 2321 amino acids with a predicted molecular mass of 243.66 Kd.
Single-pass type I membrane protein. Contain 1 signal peptide, 36 extracellular EGF repeats, 1 single transmembrane domain, and 2 PEST domains.
Synthesized in the endoplasmic reticulum as an inactive form, which is cleaved by a furin-like convertase in the trans-Golgi complex before it reaches the plasma membrane to yield an active, ligand-accessible form. Cleavage results in a transmembrane Notch subunit (NTM) and an extracellular Notch subunit (ECN).
Description Notch3 is a cell surface receptor for membrane-bound ligands including Jagged1, Jagged2, Delta-like1, Delta-like3 and Delta-like4. It is activated by ligand-receptor interaction, which triggers two successive proteolytic cleavages that release the active intracellular domain of Notch (NICD). The NICD translocates to the nucleus, where it interacts with CSL (CBF1/RBP-J kappa, Suppressor of Hairless, LAG-1). Binding of NICD to CSL displaces corepressor complexes and recruits coactivators, leading to transcription from promoters containing CSL-binding elements. The Notch3 target genes participate in wide spectrum of biological processes such as differentiation, proliferation and apoptosis.
Expression Expressed in certain types of fetal and adult tissues.
Localisation Mainly located at cell membrane. Following proteolytic events upon ligand binding, its intracellular domain is translocated into the nuclei.
Function Notch3 is a membrane receptor that mediates cell-cell interactions to facilitate cell differentiation, growth and cell death.

Mutations

Germinal Mutation in NOTCH3 is associated with cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL). CADASIL is an adult-onset disorder characterized by recurrent ischemic strokes, dementia, and premature death. It affects predominantly the small cerebral arteries, leads to progressive degeneration of vasculature smooth-muscle cells.
Disease-associated mutations are distributed throughout the epidermal growth factor-like repeats (EGFRs) that compose the extracellular domain of the Notch3 receptor and result in a loss or a gain of a cysteine residue in one of these EGFRs. Mutation hotspots were located at the two exons encoding the first five EGFRs. The findings suggested that aberrant dimerization of NOTCH3, due to abnormal disulfide bridging with NOTCH3 molecule or another protein, may be involved in the pathogenesis of CADASIL.
Somatic Somatic sequence mutations, gene translocation and amplification of chromosomal locus involved Notch3 gene were identified in T-cell lymphoma, non-small-cell lung cancer and ovarian cancer, respectively.

Implicated in

Entity Non-small-cell lung cancer
Cytogenetics t(15;19)(q11;p13)
Hybrid/Mutated Gene A breakpoint was localized to the cosmid R31546. The breakpoint was found about 50 kilobases (kb) upstream of the Notch3 and within the 3' untranslated region of a putative gene, Hunk1, on 19p. Translocation of chromosome 19p was also found in several other chromosomes, including chromosomes 12q, 14q, 17q, 4q, and 6q. Overexpression of Notch3 full-length mRNA is associated with a 19p translocation.
Oncogenesis The translocation is associated with Notch3 over-expression. Transgenic mouse study by constitutive expression of intracellular domain of Notch3 in lung epithelium using surfactant protein C promoter/enhancer resulted in inhibited differentiation of epithelial lung cell, altered lung morphology, and perinatal lethality in the transgenic mice.
  
Entity Ovarian cancer-serous type
Cytogenetics Chromosome 19p13.12 amplification harboring the Notch3 gene is frequently identified in ovarian cancer.
Oncogenesis In vitro study demonstrated that cell lines with Notch3 over-expression are more sensitive to the anti-proliferative effect of Notch3 signaling pathway inhibitors including gamma-secretase inhibitor and Notch3-specific siRNA.
  

External links

Nomenclature
HugoNOTCH3
GDBNOTCH3
Entrez_GeneNOTCH3  4854  Notch homolog 3 (Drosophila)
Cards
AtlasNOTCH3ID41557ch19p13
GeneCardsNOTCH3
EnsemblNOTCH3 [Search_View]   ENSG00000074181 [Gene_View]
GenatlasNOTCH3
GeneLynxNOTCH3
eGenomeNOTCH3
euGene4854
Genomic and cartography
GoldenPathNOTCH3  -  19p13.12   chr19:15131444-15172792 -  19p13.2-p13.1   [Description]    (hg18-Mar_2006)
EnsemblNOTCH3 - 19p13.2-p13.1 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneNOTCH3
Gene and transcription
GenbankAB209447 [ ENTREZ ]
GenbankCR611252 [ ENTREZ ]
GenbankDQ156540 [ ENTREZ ]
GenbankDQ156541 [ ENTREZ ]
GenbankDQ156542 [ ENTREZ ]
RefSeqNM_000435 [ SRS ]    NM_000435 [ ENTREZ ]
RefSeqAC_000062 [ SRS ]    AC_000062 [ ENTREZ ]
RefSeqNC_000019 [ SRS ]    NC_000019 [ ENTREZ ]
RefSeqNT_011295 [ SRS ]    NT_011295 [ ENTREZ ]
RefSeqNW_927195 [ SRS ]    NW_927195 [ ENTREZ ]
AceViewNOTCH3 AceView - NCBI
UnigeneHs.8546 [ SRS ]    Hs.8546 [ NCBI ]     HS8546 [ spliceNest ]
Fast-db8129 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ9UM47 [ SRS]    Q9UM47 [ EXPASY ]     Q9UM47 [ INTERPRO ]
PrositePS50297 ANK_REP_REGION [ SRS ]    PS50297 ANK_REP_REGION [ Expasy ]
PrositePS50088 ANK_REPEAT [ SRS ]    PS50088 ANK_REPEAT [ Expasy ]
PrositePS00010 ASX_HYDROXYL [ SRS ]    PS00010 ASX_HYDROXYL [ Expasy ]
PrositePS00022 EGF_1 [ SRS ]    PS00022 EGF_1 [ Expasy ]
PrositePS01186 EGF_2 [ SRS ]    PS01186 EGF_2 [ Expasy ]
PrositePS50026 EGF_3 [ SRS ]    PS50026 EGF_3 [ Expasy ]
PrositePS01187 EGF_CA [ SRS ]    PS01187 EGF_CA [ Expasy ]
PrositePS50258 LNR [ SRS ]    PS50258 LNR [ Expasy ]
InterproIPR002110 ANK [ SRS ]    IPR002110 ANK [ EBI ]
InterproIPR000152 Asx_hydroxyl_S [ SRS ]    IPR000152 Asx_hydroxyl_S [ EBI ]
InterproIPR006210 EGF [ SRS ]    IPR006210 EGF [ EBI ]
InterproIPR001438 EGF_2 [ SRS ]    IPR001438 EGF_2 [ EBI ]
InterproIPR000742 EGF_3 [ SRS ]    IPR000742 EGF_3 [ EBI ]
InterproIPR001881 EGF_Ca_bd [ SRS ]    IPR001881 EGF_Ca_bd [ EBI ]
InterproIPR013091 EGF_Ca_bd_2 [ SRS ]    IPR013091 EGF_Ca_bd_2 [ EBI ]
InterproIPR013111 EGF_extracell [ SRS ]    IPR013111 EGF_extracell [ EBI ]
InterproIPR006209 EGF_like [ SRS ]    IPR006209 EGF_like [ EBI ]
InterproIPR013032 EGF_like_reg_CS [ SRS ]    IPR013032 EGF_like_reg_CS [ EBI ]
InterproIPR008297 Notch [ SRS ]    IPR008297 Notch [ EBI ]
InterproIPR010660 Notch_NOD [ SRS ]    IPR010660 Notch_NOD [ EBI ]
InterproIPR011656 Notch_NODP [ SRS ]    IPR011656 Notch_NODP [ EBI ]
InterproIPR000800 Notch_region [ SRS ]    IPR000800 Notch_region [ EBI ]
CluSTrQ9UM47
PfamPF00023 Ank [ SRS ]    PF00023 Ank [ Sanger ]    pfam00023 [ NCBI-CDD ]
PfamPF00008 EGF [ SRS ]    PF00008 EGF [ Sanger ]    pfam00008 [ NCBI-CDD ]
PfamPF07974 EGF_2 [ SRS ]    PF07974 EGF_2 [ Sanger ]    pfam07974 [ NCBI-CDD ]
PfamPF07645 EGF_CA [ SRS ]    PF07645 EGF_CA [ Sanger ]    pfam07645 [ NCBI-CDD ]
PfamPF06816 NOD [ SRS ]    PF06816 NOD [ Sanger ]    pfam06816 [ NCBI-CDD ]
PfamPF07684 NODP [ SRS ]    PF07684 NODP [ Sanger ]    pfam07684 [ NCBI-CDD ]
PfamPF00066 Notch [ SRS ]    PF00066 Notch [ Sanger ]    pfam00066 [ NCBI-CDD ]
SmartSM00248 ANK [EMBL]
SmartSM00181 EGF [EMBL]
SmartSM00179 EGF_CA [EMBL]
SmartSM00004 NL [EMBL]
BlocksQ9UM47
HPRD02607
Protein Interaction databases
DIPQ9UM47
IntActQ9UM47
Polymorphism : SNP, mutations, diseases
OMIM125310;600276    [ map ]   
GENECLINICS125310;600276
SNPNOTCH3 [dbSNP-NCBI]  
SNPNM_000435 [SNP-NCI]  
SNPNOTCH3 [GeneSNPs - Utah]  NOTCH3] [HGBASE - SRS]
HAPMAPNOTCH3 [HAPMAP]  
COSMICNOTCH3 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDNOTCH3
General knowledge
Family BrowserNOTCH3 [UCSC Family Browser]
SOURCENM_000435
SMDHs.8546
SAGEHs.8546
GOreceptor activity [Amigo]  receptor activity
GOcalcium ion binding [Amigo]  calcium ion binding
GOprotein binding [Amigo]  protein binding
GOnucleus [Amigo]  nucleus
GOplasma membrane [Amigo]  plasma membrane
GOintegral to plasma membrane [Amigo]  integral to plasma membrane
GOtranscription [Amigo]  transcription
GOregulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GONotch signaling pathway [Amigo]  Notch signaling pathway
GOmulticellular organismal development [Amigo]  multicellular organismal development
GOanatomical structure morphogenesis [Amigo]  anatomical structure morphogenesis
GOintegral to membrane [Amigo]  integral to membrane
GOcell differentiation [Amigo]  cell differentiation
GOforebrain development [Amigo]  forebrain development
GOnegative regulation of neuron differentiation [Amigo]  negative regulation of neuron differentiation
GOneuron fate commitment [Amigo]  neuron fate commitment
GOregulation of developmental process [Amigo]  regulation of developmental process
KEGGDorso-ventral axis formation
KEGGNotch signaling pathway
PubGeneNOTCH3
TreeFamNOTCH3
CTD4854 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeNOTCH3 Related clones (RZPD - Berlin)
PubMed
PubMed57 Pubmed reference(s) in LocusLink

Bibliography

Chromosome 19 translocation, overexpression of Notch3, and human lung cancer.
Dang TP, Gazdar AF, Virmani AK, Sepetavec T, Hande KR, Minna JD, Roberts JR, Carbone DP
Journal of the National Cancer Institute. 2000 ; 92 (16) : 1355-1357.
PMID 10944559
 
Constitutive activation of Notch3 inhibits terminal epithelial differentiation in lungs of transgenic mice.
Dang TP, Eichenberger S, Gonzalez A, Olson S, Carbone DP
Oncogene. 2003 ; 22 (13) : 1988-1997.
PMID 12673204
 
Notch3 gene amplification in ovarian cancer.
Park JT, Li M, Nakayama K, Mao TL, Davidson B, Zhang Z, Kurman RJ, Eberhart CG, Shih IeM, Wang TL
Cancer research. 2006 ; 66 (12) : 6312-6318.
PMID 16778208
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written08-2007Tian-Li Wang
Departments of Gynecology/Obstetrics and Oncology Johns Hopkins Medical Institutions CRBII, Rm: 306 1550 Orleans Street Baltimore, MD 21231, USA

Citation

This paper should be referenced as such :
Wang TL . NOTCH3 (Notch homolog 3 (Drosophila)). Atlas Genet Cytogenet Oncol Haematol. August 2007 .
URL : http://AtlasGeneticsOncology.org/Genes/NOTCH3ID41557ch19p13.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:25:35 2008


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