Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PLCB1 (phospholipase C, beta 1 (phosphoinositide-specific))

Identity

Other namesPLC-I
PI-PLC
PLC-154
Hugo PLCB1
Location 20p12.3
Local_order between the markers D20S917 and D20S177

DNA/RNA

 
  Panel A: structure of PLCB1a and PLCB1b human cDNAs. Upper, PLCB1a; middle, PLCB1b; lower, PLCB1b with different 3'- UTR.
Panel B: structure of the splicing variant lacking exons 4­9.
Description 33 small exons and introns spanning about 250 kbp.
Transcription By alternative splicing at the 3-prime end the gene produces 2 variants: PLCB1a (1.216 aminoacids, 6705 bp mRNA) and PLCB1b (1.173 aminoacids, 6823 bp mRNA). An additional exon at the 5-prime end was identified, which gives a smaller isoform, and another PLCB1b isoform, which is produced by using an alternative 3¹-UTR.
Pseudogene No known pseudogenes.

Protein

 
  PH = Pleckstrin Homology Domain; EF = EF-Hand Domain;
X and Y = Catalytic Domain;
C2 = Calcium-binding Domain;
NLS = Nuclear Localisation Signal (common to both isoforms);
NES = Nuclear Export Signal
Description PLC beta1 contains a PH-domain at the NH2-terminus, which is present in many signalling proteins, that binds to polyphosphoinositides and to inositol phosphates. Two additional modules are also present: an EF-hand domain, located between the PH and X domains, and a C2 domain, which is sometimes represented as part of an extended Y domain.
Expression PLC beta1 is ubiquitous at different levels of expression: higher signal intensities were observed in some CNS areas, such as the amygdala, caudate nucleus, and hippocampus, and PLCB1a appeared to be expressed at slightly higher levels in most tissues. PCR analysis of embryonic and adult rat tissues indicated restricted expression of both isoforms to embryonic and adult brain, with lower levels of expression in lung and testis.
Localisation By using confocal immunolocalization of endogenous or transfected epitope-tagged PLC beta1, for subcellular localisation it has been shown that PLCB1a is within the cytoplasm and at the plasma membrane but localises also in the nucleus. PLCB1b is almost completely nuclear.
Function Phospholipase C-beta (PLC beta) catalyzes the generation of inositol 1,4,5-trisphosphate (IP3) and diacylglycerol (DAG) from phosphatidylinositol 4,5-bisphosphate (IP2), a key step in the intracellular transduction of many extracellular signals. PLCB1 is one of several mammalian PLCB isoforms which differ in their function and expression patterns in vivo. PLC beta1 protein is present in the nucleus and is involved in the control of the cell cycle.
Homology 96% with bovine PLC beta1; The amino acid sequences of PLC isozymes are relatively not conserved except for two regions, known as the X and Y domains that form the catalytic core which is 60% homologous among all mammalian isozymes.

Mutations

Note Until now only deletions have been relevated by using FISH analysis.

Implicated in

Entity Myelodysplastic Syndrome
Note Transition from Myelodysplastic Syndrome to Acute Myeloid Leukemia
Disease In patients with normal GTG banding karyotype affected by Myelodysplastic Syndrome (MDS) (9 patients) and with Acute Myeloid Leukemia (AML) (6 patients), a monoallelic loss of the PLCB1 gene was detected. All the MDS patients, even though with normal karyotype, belonged to the high-risk group as scored by IPSS and FAB classifications. Out of 9 MDS patients with normal karyotype 4 had monoallelic deletion of the PLC beta1 gene, and all 4 died within 1 to 6 months after developing AML, compared to survival of over 30 months in the 5 MDS patients without the deletion. Two of 6 AML patients with normal karyotype had a monoallelic deletion of the PLCB1 gene; these 2 patients had a reduced survival (1 to 12 months) compared to the AML patients without the deletion (20 to 29 months). These evidences suggest a possible role for PLC beta1 in the progression of MDS to AML in high-risk patients.
Prognosis Worse in patients having the deletion of the PLC beta1 gene.
Cytogenetics FISH performed using a 115.000 bp probe (PAC clone 881E24) spanning from exon 19 to 32 of the gene.
FISH analysis, using KIAA 0581, i.e., part of human PLC beta1 cDNA, of human metaphases showing signals on both chromosomes 20 at band p12. (a) Q-Like banding; (b) fluorescence signals detected by FISH; (c) a partial karyotype along with a human chromosome 20 ideogram. (d) A schematic representation of the 1.9 cM interval, flanked by microsatellite markers D20S917 and D20S977, to which human PLC beta1 maps.
Oncogenesis PLC beta1 is a key player in the control of cell cycle, namely the physiological progression through the G1 phase, in that the nuclear PLC beta1 evoked signalling targets the cyclin D3/cdk4 complex which phosphorylates retinoblastoma protein (pRb) that in turn activates the transcription factor E2F-1. Possibly alterations of this pathway could be involved in malignancies.
  

External links

Nomenclature
HugoPLCB1
GDBPLCB1
Entrez_GenePLCB1  23236  phospholipase C, beta 1 (phosphoinositide-specific)
Cards
AtlasPLCB1ID41742ch20p12
GeneCardsPLCB1
EnsemblPLCB1 [Search_View]   ENSG00000182621 [Gene_View]
GenatlasPLCB1
GeneLynxPLCB1
eGenomePLCB1
euGene23236
Genomic and cartography
GoldenPathPLCB1  -  20p12.3   chr20:8061296-8813545 +  20p12   [Description]    (hg18-Mar_2006)
EnsemblPLCB1 - 20p12 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGenePLCB1
Gene and transcription
GenbankAB011153 [ ENTREZ ]
GenbankAJ278313 [ ENTREZ ]
GenbankAJ278314 [ ENTREZ ]
GenbankAK023689 [ ENTREZ ]
GenbankAK127693 [ ENTREZ ]
RefSeqNM_015192 [ SRS ]    NM_015192 [ ENTREZ ]
RefSeqNM_182734 [ SRS ]    NM_182734 [ ENTREZ ]
RefSeqAC_000063 [ SRS ]    AC_000063 [ ENTREZ ]
RefSeqNC_000020 [ SRS ]    NC_000020 [ ENTREZ ]
RefSeqNT_011387 [ SRS ]    NT_011387 [ ENTREZ ]
RefSeqNW_927317 [ SRS ]    NW_927317 [ ENTREZ ]
AceViewPLCB1 AceView - NCBI
UnigeneHs.431173 [ SRS ]    Hs.431173 [ NCBI ]     HS431173 [ spliceNest ]
Fast-db5205 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ9NQ66 [ SRS]    Q9NQ66 [ EXPASY ]     Q9NQ66 [ INTERPRO ]
PrositePS50004 C2 [ SRS ]    PS50004 C2 [ Expasy ]
PrositePS50007 PIPLC_X_DOMAIN [ SRS ]    PS50007 PIPLC_X_DOMAIN [ Expasy ]
PrositePS50008 PIPLC_Y_DOMAIN [ SRS ]    PS50008 PIPLC_Y_DOMAIN [ Expasy ]
InterproIPR000008 C2_Ca-dep [ SRS ]    IPR000008 C2_Ca-dep [ EBI ]
InterproIPR011992 EF-Hand_type [ SRS ]    IPR011992 EF-Hand_type [ EBI ]
InterproIPR015359 Phospholipase_C_EF-hand-like [ SRS ]    IPR015359 Phospholipase_C_EF-hand-like [ EBI ]
InterproIPR013841 Phospholipase_C_PI-sp_X/Y [ SRS ]    IPR013841 Phospholipase_C_PI-sp_X/Y [ EBI ]
InterproIPR001192 Phospholipase_C_Pinositol-sp_C [ SRS ]    IPR001192 Phospholipase_C_Pinositol-sp_C [ EBI ]
InterproIPR000909 Phospholipase_C_Pinositol-sp_X [ SRS ]    IPR000909 Phospholipase_C_Pinositol-sp_X [ EBI ]
InterproIPR001711 Phospholipase_C_Pinositol-sp_Y [ SRS ]    IPR001711 Phospholipase_C_Pinositol-sp_Y [ EBI ]
InterproIPR014815 PLC-beta_C [ SRS ]    IPR014815 PLC-beta_C [ EBI ]
CluSTrQ9NQ66
PfamPF00168 C2 [ SRS ]    PF00168 C2 [ Sanger ]    pfam00168 [ NCBI-CDD ]
PfamPF09279 efhand_like [ SRS ]    PF09279 efhand_like [ Sanger ]    pfam09279 [ NCBI-CDD ]
PfamPF00388 PI-PLC-X [ SRS ]    PF00388 PI-PLC-X [ Sanger ]    pfam00388 [ NCBI-CDD ]
PfamPF00387 PI-PLC-Y [ SRS ]    PF00387 PI-PLC-Y [ Sanger ]    pfam00387 [ NCBI-CDD ]
PfamPF08703 PLC-beta_C [ SRS ]    PF08703 PLC-beta_C [ Sanger ]    pfam08703 [ NCBI-CDD ]
SmartSM00239 C2 [EMBL]
SmartSM00148 PLCXc [EMBL]
SmartSM00149 PLCYc [EMBL]
ProdomPD001202 PI_PLC_Y[INRA-Toulouse]
ProdomQ9NQ66 PLCB1_HUMAN [ Domain structure ]   Q9NQ66 PLCB1_HUMAN  [ sequences sharing at least 1 domain ]
BlocksQ9NQ66
HPRD06177
Protein Interaction databases
DIPQ9NQ66
IntActQ9NQ66
Polymorphism : SNP, mutations, diseases
OMIM607120    [ map ]   
GENECLINICS607120
SNPPLCB1 [dbSNP-NCBI]  
SNPNM_015192 [SNP-NCI]  
SNPNM_182734 [SNP-NCI]  
SNPPLCB1 [GeneSNPs - Utah]  PLCB1] [HGBASE - SRS]
HAPMAPPLCB1 [HAPMAP]  
COSMICPLCB1 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDPLCB1
General knowledge
Family BrowserPLCB1 [UCSC Family Browser]
SOURCENM_015192
SOURCENM_182734
SMDHs.431173
SAGEHs.431173
Enzyme3.1.4.11 [ Enzyme-SRS ]   3.1.4.11 [ Brenda-SRS ]   3.1.4.11 [ KEGG ]   3.1.4.11 [ WIT ]
GOphosphoinositide phospholipase C activity [Amigo]  phosphoinositide phospholipase C activity
GOsignal transducer activity [Amigo]  signal transducer activity
GOcalcium ion binding [Amigo]  calcium ion binding
GOnucleus [Amigo]  nucleus
GOcytoplasm [Amigo]  cytoplasm
GOintracellular signaling cascade [Amigo]  intracellular signaling cascade
GOlipid catabolic process [Amigo]  lipid catabolic process
GOhydrolase activity [Amigo]  hydrolase activity
BIOCARTACCR3 signaling in Eosinophils    [Genes]
BIOCARTAThrombin signaling and protease-activated receptors    [Genes]
BIOCARTARoles of ß-arrestin-dependent Recruitment of Src Kinases in GPCR Signaling    [Genes]
BIOCARTAß-arrestins in GPCR Desensitization    [Genes]
BIOCARTARole of ß-arrestins in the activation and targeting of MAP kinases    [Genes]
BIOCARTACadmium induces DNA synthesis and proliferation in macrophages    [Genes]
BIOCARTARegulation of ck1/cdk5 by type 1 glutamate receptors    [Genes]
BIOCARTAPhospholipids as signalling intermediaries    [Genes]
BIOCARTAEicosanoid Metabolism    [Genes]
BIOCARTAfMLP induced chemokine gene expression in HMC-1 cells    [Genes]
BIOCARTAPKC-catalyzed phosphorylation of inhibitory phosphoprotein of myosin phosphatase    [Genes]
BIOCARTAActivation of PKC through G protein coupled receptor    [Genes]
BIOCARTAPhospholipase C Signaling Pathway    [Genes]
BIOCARTAAspirin Blocks Signaling Pathway Involved in Platelet Activation    [Genes]
BIOCARTAG-Protein Signaling Through Tubby Proteins    [Genes]
KEGGInositol phosphate metabolism
KEGGCalcium signaling pathway
KEGGPhosphatidylinositol signaling system
KEGGWnt signaling pathway
KEGGGap junction
KEGGLong-term potentiation
KEGGLong-term depression
KEGGGnRH signaling pathway
PubGenePLCB1
TreeFamPLCB1
CTD23236 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbePLCB1 Related clones (RZPD - Berlin)
PubMed
PubMed37 Pubmed reference(s) in LocusLink

Bibliography

Prediction of the coding sequences of unidentified human genes. IX. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro.
Nagase T, Ishikawa K, Miyajima N, Tanaka A, Kotani H, Nomura N, Ohara O
DNA research : an international journal for rapid publication of reports on genes and genomes. 1998 ; 5 (1) : 31-39.
PMID 9628581
 
Cloning and characterization of the human phosphoinositide-specific phospholipase C-beta 1 (PLC beta 1).
Caricasole A, Sala C, Roncarati R, Formenti E, Terstappen GC
Biochimica et biophysica acta. 2000 ; 1517 (1) : 63-72.
PMID 11118617
 
Identification and chromosomal localisation by fluorescence in situ hybridisation of human gene of phosphoinositide-specific phospholipase C beta(1).
Peruzzi D, Calabrese G, Faenza I, Manzoli L, Matteucci A, Gianfrancesco F, Billi AM, Stuppia L, Palka G, Cocco L
Biochimica et biophysica acta. 2000 ; 1484 (2-3) : 175-182.
PMID 10760467
 
Molecular characterization of the human PLC beta1 gene.
Peruzzi D, Aluigi M, Manzoli L, Billi AM, Di Giorgio FP, Morleo M, Martelli AM, Cocco L
Biochimica et biophysica acta. 2002 ; 1584 (1) : 46-54.
PMID 12213492
 
Inositide-specific phospholipase c beta1 gene deletion in the progression of myelodysplastic syndrome to acute myeloid leukemia.
Lo Vasco VR, Calabrese G, Manzoli L, Palka G, Spadano A, Morizio E, Guanciali-Franchi P, Fantasia D, Cocco L
Leukemia : official journal of the Leukemia Society of America, Leukemia Research Fund, U.K. 2004 ; 18 (6) : 1122-1126.
PMID 15085153
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written12-2005Matilde Y. Follo, Vincenza Rita Lo Vasco, Giovanni Martinelli, Giandomenico Palka, Lucio Cocco
Cellular Signalling Laboratory, Department of Anatomical Sciences, University of Bologna, Via Irnerio, 48 I-40126 Bologna, Italy

Citation

This paper should be referenced as such :
Follo MY, Lo Vasco VR, Martinelli G, Giandomenico Palka G, Cocco L . PLCB1 (phospholipase C, beta 1 (phosphoinositide-specific)). Atlas Genet Cytogenet Oncol Haematol. December 2005 .
URL : http://AtlasGeneticsOncology.org/Genes/PLCB1ID41742ch20p12.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:26:03 2008


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